KEGG   Rhodococcus sp. 008: AOT96_03420
Entry
AOT96_03420       CDS       T05462                                 
Name
(GenBank) helicase
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
rhod  Rhodococcus sp. 008
Pathway
rhod03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rhod00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    AOT96_03420
  09124 Replication and repair
   03420 Nucleotide excision repair
    AOT96_03420
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rhod03021]
    AOT96_03420
   03400 DNA repair and recombination proteins [BR:rhod03400]
    AOT96_03420
Enzymes [BR:rhod01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     AOT96_03420
Transcription machinery [BR:rhod03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     AOT96_03420
DNA repair and recombination proteins [BR:rhod03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     AOT96_03420
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C DEAD SNF2-rel_dom
Other DBs
NCBI-ProteinID: ANQ70009
Position
739232..740890
AA seq 552 aa
MTDGPLIVQSDKTLLLEVDHERAGDARQAIAPFAELERAPEHVHTYRITPLALWNARAAG
HDAEQVVDALVSYSRFAVPQPLLVDIVDTMARYGRLQLVKSPVHGLILVSLDRAVLTEVM
RHKKISPMLGEKVDDDTVIVHPSERGRLKQMLLKVGWPAEDLAGYVDGEAHPIDLAFEEG
HWELRDYQQMAADSFWAGGSGVVVLPCGAGKTMVGAAAMAKAKATTLILVTNTVAGRQWK
RELIARTSLTEEEIGEYSGERKEIRPVTIATYQVITRRTKGEYKHLELFDSRDWGLVIYD
EVHLLPAPVFRMTADLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGWI
APADCVEVRVTMTDAERMSYAVAEPEERYKLCSTAHTKIAVVKSILAKHPDSPTLVIGAY
LDQLDELGEALNAPVIKGSTKNKEREILFDQFRNGEIQTLVVSKVANFSIDLPEASVAVQ
VSGTFGSRQEEAQRLGRLLRPKHDGGQAHFYSVVSRDTLDAEYAAHRQRFLAEQGYAYRI
TDADDLLGPAIG
NT seq 1659 nt   +upstreamnt  +downstreamnt
gtgaccgacggaccgttgatcgtccaatccgacaagacgctgctgttggaggtcgaccac
gagcgcgccggcgatgccaggcaggcaatcgcccccttcgcggaactcgaacgggccccc
gaacacgtccacacgtatcgcatcactcccctggccttgtggaatgcccgcgccgccgga
cacgacgccgagcaggttgtcgacgcgctcgtgtcgtactcacgattcgcggttccacaa
ccgctgctggtcgacatcgtcgacacgatggccaggtacggacgcttacagctggtcaag
agcccggtgcacggcctcatcctggtcagcctcgaccgcgcagtcctcaccgaggtgatg
cgacacaagaagatctcgccgatgctcggtgagaaggtcgacgacgacaccgtgatcgtc
cacccgagcgaacgcggccgcctcaagcagatgctgctcaaggtgggctggccggccgag
gacctcgccggctacgtggacggcgaagcgcacccgatcgatctcgctttcgaagagggc
cactgggaactgcgcgactaccagcagatggcagcggattcgttctgggccggcggctcg
ggcgtcgtcgtgctgccgtgtggcgccggcaagacgatggtgggcgccgcagcgatggca
aaggccaaggccaccaccctcatcctcgtcaccaataccgttgccggtcgtcagtggaag
cgtgagttgatcgcgcgtacatccttgaccgaggaagaaatcggcgaatactccggcgag
cgcaaggagattcggccggtcacgatcgcgacctaccaggtgatcacacgtcgcacgaag
ggcgagtacaagcacctcgaacttttcgactcccgcgactggggactggtgatctacgac
gaggtccacttgctgcccgcgcctgtcttccggatgacggcagatctgcagtcgcgccgc
cgtctcggcctgaccgcaacgctggttcgtgaggacggccgcgaaggcgacgtcttctcg
ctcatcggccccaagcgctacgacgctccgtggaaggacatcgaagcgcagggctggatc
gcgccggccgactgcgtcgaggtgcgagtgacgatgacggacgccgagcgcatgtcctat
gccgtcgccgaaccggaggagcgctacaaactgtgctcgacggctcacacgaaaattgcg
gtcgtgaagtcgatcctggccaagcaccccgattctccgactttggtgatcggtgcgtat
ctcgatcagctcgacgaactcggcgaagccctgaacgccccggtgatcaagggatccacc
aagaacaaggaacgcgagatcctcttcgatcagttccgtaacggtgagatccagacgctg
gtggtgagtaaggtcgcgaacttctcgatcgaccttccggaggcgtctgtcgccgtgcag
gtttcgggaaccttcgggtcgagacaggaagaagcgcagcgactcggacgcctactgcga
cccaagcacgacggcggtcaggctcacttctattcggtggtctcgcgcgacactctcgat
gcggagtacgcggcacatcgtcagcgattcctcgccgaacagggctacgcctatcggatc
accgacgccgatgacctgctcggacctgccatcggctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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