KEGG T04631: LPB142

Rhodobacter sp. LPB0142: LPB142_11250

Entry

LPB142_11250      CDS       T04631

Name

(GenBank) exodeoxyribonuclease VII large subunit

K03601

exodeoxyribonuclease VII large subunit [EC:3.1.11.6]

Organism

rhp Rhodobacter sp. LPB0142

Pathway

rhp03430

Mismatch repair

Brite

KEGG Orthology (KO) [BR:rhp00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    LPB142_11250
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rhp03400]
    LPB142_11250
Enzymes [BR:rhp01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.6  exodeoxyribonuclease VII
     LPB142_11250
DNA repair and recombination proteins [BR:rhp03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA exonucleases
     LPB142_11250

SSDB

Motif

Pfam:

Exonuc_VII_L tRNA_anti_2 tRNA_anti-codon Gly_transporter RecJ_OB CENP-O

Other DBs

NCBI-ProteinID:

AOZ69825

UniProt:

A0A1D9MD77

Position

complement(2310634..2312187)

AA seq 517 aa
MDLLDDTTGSNAHDYTVSEISGAVKRVIEGEFGRVRVRGEVGRVSRPGSGHLYFDLKDDR
SVIAAVSWKGQVARMAVRPEEGMEVIATGKLTTFPGQSKYQLIVDEVEPAGAGALMAMLE
ARRRALAAEGLFEAGRKQPIPFLPEVIGVVTSPSGAVIRDILHRLRDRFPRRVLIWPVAV
QGQACAPEVTAAIRGFNALAPGGAVPRPDLIIVARGGGSLEDLWGFNEESVVRAAAESAI
PLISAVGHETDTTLIDFAADRRAPTPTAAAEMAVPVRAELAARLAEAEARMARAARGRIE
RNGQRMADLSRALGRPETLIAPARQRFDLMSDRLAPALRMVSTRKRAAFAPLAALIGPQI
LARFMRHERDRLAGLSGRLAPALARNRAEAARMNARNRAALEGLAERLARAPEARLAALA
ERLARLDRMRQTLGYTETLRRGYAVVRGAPGLITARAQAAAAGALEIEFHDGRIGAQTTE
SPPPPAAPPAPEASPAPKTARAKPPRKDTPPEQGSLF

NT seq 1554 nt +upstreamnt +downstreamnt
atggaccttctcgacgatacaaccggctcaaacgcccatgattacaccgtttcggagatt
tccggcgcggtgaaacgggtgatcgagggcgagtttggccgcgtgcgggtgcgcggcgag
gtcgggcgggtcagccggccgggctcggggcatctctatttcgacctcaaggatgaccgc
tcggtgatcgcggcggtgagctggaagggccaggtcgcgcggatggcggtgcgccccgag
gaggggatggaggtgatcgccaccggcaagctcaccaccttcccgggccagtcgaaatat
cagctgatcgttgatgaggtggagcccgccggcgcgggcgccttgatggcgatgctcgag
gcgcgccgccgtgcgctcgccgccgaagggctcttcgaggcggggcgcaaacagccgatc
ccgtttctgcccgaggtgatcggggtggtgacctcgccctcgggggcggtgatccgcgat
atcctgcaccggctgcgcgaccggtttccgcgccgcgtgctgatctggccggtggcggtg
caggggcaggcctgcgcgcccgaggtgacggccgcgatccgcggcttcaacgcgctcgcg
cccggcggcgcggtgccgcggccggacctcatcatcgtggcgcgcggcggcggctcgctc
gaggatctgtggggcttcaacgaggaaagcgtggtgcgcgcggcggccgagagcgcgatc
ccgctgatctcggcggtggggcatgagaccgatacgaccttgatcgatttcgccgccgac
cggcgcgcgccgaccccgacggcggcggccgaaatggcggtgccggtgcgcgcggaactg
gccgcgcggctggccgaggcggaggcgcggatggcgcgggcggcgcgcgggcgcatcgag
cgcaatggtcagcggatggcggatctctcccgcgcgctcggccgccccgagacgctgatc
gcaccggcgcggcaacggtttgacctgatgtcggatcgtttggcgcccgcgctgcggatg
gtctcgacgcgcaaacgcgcggcctttgcgccgcttgccgcgctgatcgggccgcagatt
ctggcgcgcttcatgcgccatgagcgcgaccggctcgctgggctctcggggcggctcgcg
cctgcgctcgcgcgcaaccgcgccgaggccgcgcggatgaatgcgcgcaaccgcgccgcg
ctcgaggggcttgccgagcggctcgcgcgcgcccccgaggcgcggctcgcggcgctggcc
gagcggctcgcgcggcttgatcggatgcgccagacgctcggctataccgagacgctgcgg
cgcggctatgcggtggtgcgcggcgcgccggggctgatcaccgcgcgcgcacaggccgcc
gccgccggggcgctcgagatcgaattccacgatggccggatcggcgcgcaaacgaccgaa
agcccgccgccgcccgccgcccccccggcccccgaggcgagccccgcgccaaaaaccgcc
cgcgcgaagcccccgcgcaaggacacgccgcccgaacagggctcactcttctga

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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