KEGG   Rhodococcus sp. p52: IM25_19125
Entry
IM25_19125        CDS       T05434                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
rhq  Rhodococcus sp. p52
Pathway
rhq03030  DNA replication
rhq03410  Base excision repair
rhq03420  Nucleotide excision repair
rhq03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rhq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    IM25_19125
   03410 Base excision repair
    IM25_19125
   03420 Nucleotide excision repair
    IM25_19125
   03440 Homologous recombination
    IM25_19125
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rhq03032]
    IM25_19125
   03400 DNA repair and recombination proteins [BR:rhq03400]
    IM25_19125
Enzymes [BR:rhq01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     IM25_19125
DNA replication proteins [BR:rhq03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     IM25_19125
DNA repair and recombination proteins [BR:rhq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     IM25_19125
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     IM25_19125
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N 5_3_exonuc DNA_pol_A_exo1 HHH_5 DNA_pol_lambd_f
Other DBs
NCBI-ProteinID: AOD23429
UniProt: A0A1B2UGY3
Position
complement(4147271..4149994)
AA seq 907 aa
MTRASTSATSTAATDDRPTLLLLDGHSLAFRAFYALPAENFKTHSGQTTNAVYGFTSMLI
NLLRDEQPTHVAAAFDVSRKTFRAELFAAYKAQRSAAPDDFKGQIDLTKDVLGAMGIPVM
AIEGYEADDIIATLATQAHAQGFRVLVVTGDRDALQLVNGDITVLYPRRGVSDLTRFTPD
AVEEKYGLTPQQYPDFAALRGDPSDNLPGIPGVGEKTAAKWIREYGSLSGLVDRVDEVRG
KTGDALRENLSNVLLNRQLTEMVRDVAVPYTPEQLALAPWDRDRIHRLFDDLEFKVLRDR
LFETLSSAEPEAEEGFEVRGGIVEPGALGDWLAEHAPAGRRHGLAVVGTGTPYGGDATAI
AVAGADGEGAYVSTVALTPEDENALAAWLANPAVEKAVHEAKFAIHALRGRGWTLAGITS
DTALAAYLVRPGQRSFKLDDLSLRYLKRELRVEDTGAQQLSLLDDEDAADAQAAEAQILA
ARAVVDLAAALDTELGEIESVRLLTEMELPLLEVLAELEATGIAVDSAHLHDLQSEFAAQ
VAAAANAAYEVIGKQINLGSPKQLQVVLFDELEMPKTKKTKTGYTTDADALQNLFDKTGH
PFLEHLLAHREHTKMKTTVDGLIKSIADDGRIHTTFNQTVAATGRLSSTEPNLQNIPVRT
EAGRRIRDGFVVGDGFDVLLTADYSQIEMRIMAHLSADEGLIEAFRTGEDLHTFVASRAF
GLPLEEVTPELRRRVKAMSYGLAYGLSAYGLAQQLKISTDEAREQMEAYFTRFGGVRDYL
YNVVEEARKVGYTSTLYGRRRYLPDLNSDNRQRREIAERAALNAPIQGTAADIIKVAMID
VQKALSEAGLRSRMLLQVHDELVLEVVEAEREQVEALVRDKMDSVIELSVPLEVSVGYGR
SWDAAAH
NT seq 2724 nt   +upstreamnt  +downstreamnt
gtgacccgtgcatccacttccgcgacgtccaccgcggccaccgacgaccgcccgaccctg
ctgctcctcgacggccattccctcgcgttccgcgcgttctacgcgctgcccgccgagaac
ttcaagacccacagcgggcagaccacgaacgcggtctacgggttcacctccatgctcatc
aacctgctgcgcgacgagcagcccacgcacgtcgcggcggcattcgacgtcagccgcaag
accttccgtgccgaactgttcgccgcctacaaggcccagcgcagcgccgcacccgacgac
ttcaaggggcagatcgacctcaccaaggacgtcctcggcgcgatggggatcccggtgatg
gcgatcgagggctacgaggccgacgacatcatcgccacgctcgcgacgcaggcgcacgcc
cagggcttccgggtgctcgtggtgaccggcgaccgcgacgcgctccaactcgtcaacggc
gacatcacggtgctgtatccgcggcgcggcgtctccgacctgacgcgcttcacccccgac
gcggtggaggagaagtacggactcaccccccagcagtatccggacttcgcggcgctgcgc
ggcgacccgagcgacaacctgcccggcatccccggcgtgggcgagaagaccgccgcgaaa
tggatccgcgagtacggaagcctgagcggactcgtcgaccgcgtcgacgaggtgcgcggc
aagaccggcgacgcgctgcgcgagaacctgtccaacgtgttgctcaaccgccagctcacc
gagatggtgcgcgacgtggccgtgccgtacacccccgaacaactcgccctcgccccgtgg
gaccgcgaccgcatccaccgcctgttcgacgacctcgagttcaaggtgctgcgcgaccgg
ctgttcgagacgctctcgtcggccgagcccgaggccgaggagggcttcgaggtgcgcggc
gggatcgtcgagccgggtgccctcggcgactggctcgccgagcacgccccggcgggtcga
cgtcatgggctcgccgtggtgggcaccggcactccctacggaggcgacgcgaccgcgatc
gccgtcgccggggccgacggtgagggcgcctatgtgagcacggtggcgctcacgcccgag
gacgagaacgccctcgccgcatggctcgcgaaccccgcagtggagaaggccgtgcacgag
gcgaagttcgccatccacgcgctgcgcggacgcggctggacgctcgccggcatcaccagc
gacaccgcgctcgccgcctatctggtgcggcccggccagcgctcgttcaagctcgacgac
ctgtcgctgcgctacctcaagcgtgagctgcgagtggaagacaccggcgcgcaacaactc
tcgttgctcgacgacgaagacgccgccgacgcgcaagcggccgaggcgcagatcctcgcg
gcgcgcgccgtcgtcgacctcgccgcggccctcgacaccgaactcggcgagattgaatcg
gtgcgcctgctcaccgagatggaactgcccctgctcgaggtcctcgcagaactcgaggcc
accggcatcgccgtcgactcggcgcacctgcacgacctgcagtccgaattcgcggcccag
gtcgccgccgccgcgaacgccgcctacgaggtgatcggcaagcagatcaacctcggctcg
ccgaaacagttgcaggtggtgctgttcgacgagctcgagatgccgaagacgaagaagacc
aagaccggctacaccaccgacgcggatgccttgcagaacctgttcgacaagacgggccat
cccttcctcgaacacctgctcgcgcaccgtgagcacaccaagatgaagaccaccgtcgac
ggactcatcaagtccatcgccgacgacggtcgcatccacaccaccttcaaccagaccgtc
gcggcgacgggccggctctcgtcgaccgagccgaacctgcagaacattccggtgcggacc
gaggccggtcgccggatccgcgacggtttcgtggtgggcgacggattcgacgtgctgctc
accgccgactacagccagatcgagatgcgcatcatggcgcacctgtcggccgacgagggg
ctcatcgaggcattccgtacgggcgaggacctgcacaccttcgtggcgtcgcgggcgttc
gggctgccgctcgaggaggtcaccccggagctgcgtcgccgcgtcaaggcgatgtcctac
ggtctcgcctacgggttgagcgcctacggtctcgcccagcagctgaagatctccaccgac
gaggcccgcgagcagatggaggcctacttcacccgcttcggcggcgtgcgcgactacctc
tacaacgtggtcgaggaggcccgcaaggtcggctacacgtccaccctctacggccgccgc
cggtacctgcccgacctcaacagcgacaaccggcagcgccgggagatcgccgagcgcgcc
gcgctcaacgcccccatccagggcacggccgccgacatcatcaaggtcgcgatgatcgac
gtgcagaaggcgctcagcgaggccggactgcggtcgcggatgctgctgcaggtgcacgac
gaactcgtgctcgaagtggtcgaagccgagcgcgaacaggtcgaggcgctcgtgcgcgac
aagatggactccgtcatcgaattgtcggtgccgctcgaggtctcggtcggttacggccgc
agctgggacgccgcggcgcactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (20)   

Download RDF
DBGET integrated database retrieval system