KEGG   Rhodococcus sp. p52: IM25_20870
Entry
IM25_20870        CDS       T05434                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
rhq  Rhodococcus sp. p52
Pathway
rhq03030  DNA replication
rhq03410  Base excision repair
rhq03420  Nucleotide excision repair
rhq03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rhq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    IM25_20870
   03410 Base excision repair
    IM25_20870
   03420 Nucleotide excision repair
    IM25_20870
   03430 Mismatch repair
    IM25_20870
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rhq03032]
    IM25_20870
   03400 DNA repair and recombination proteins [BR:rhq03400]
    IM25_20870
Enzymes [BR:rhq01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     IM25_20870
DNA replication proteins [BR:rhq03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     IM25_20870
DNA repair and recombination proteins [BR:rhq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     IM25_20870
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     IM25_20870
   MMR (mismatch excision repair)
    DNA ligase
     IM25_20870
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      IM25_20870
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 HHH PTCB-BRCT UPF0758_N
Other DBs
NCBI-ProteinID: AOD23727
UniProt: A0A1B2UHT7
Position
complement(4516746..4518854)
AA seq 702 aa
MSEPTDAPITAPPEARERWQDLAEQVREHQFRYYVRDAPIISDGQFDALLGELQALEDQY
TELRTPDSPTQLVGGGFATEFGAVEHLERMLSLDNVFDEDELRAWLSRAEVETGTHPDYL
CEVKIDGVALSLVYENGKLVRAATRGDGRTGEDVTLNARTIDDVPEKLTGTAEYPIPTLL
EVRGEVFFRLEDFQTLNAGLVAEDKPPFANPRNSAAGSLRQKNPAVTARRRLRMYCHGYG
RMEGFEPRSQSDAYAAFAAWGLPVSPHTVRVQGAEAVVERMRYWGEHRHDIEHEIDGLVV
KIDDMGLHRRLGATSRAPRWAIAYKYPPEEVTTKLLDIRVSVGRTGRVTPFAYMEPVTVA
GSTVSLATLHNASEVERKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGSEYAFEMPTQCP
ECGTTLAPAKEGDVDLRCPNSRSCPAQLRERVFHVSGRGAFDIEALGYEAATALLEGKII
ADEGDLFSLTKEDLERIAFFRTTKGVLSKNGERLLQNLDKAKEQPLWRVLVALSIRHVGP
TAARALATEFGSLDRIRAASVDELAAVEGVGPTIAAAVTDWFTVDWHVAIVDKWAAAGVR
MADERDESIPRTLEGLSIVVTGTLAGFSRDQAKEAVLARGGKAAGSVSKKTAFVVIGDNP
GSKADKAADLGVPVLDEDGFRILLDEGPDAARAYLEGREGED
NT seq 2109 nt   +upstreamnt  +downstreamnt
gtgagtgaaccgacggacgcacccatcaccgctcctccggaggcgcgtgagcgctggcag
gatctcgccgaacaggtgcgcgagcatcagttccgttattacgtgcgcgacgcccccatc
atctccgacggtcagttcgacgcgctcctcggcgaactgcaggcactcgaggatcagtac
accgaactccgcacgccggattcgcccacccagctggtcggcggcggcttcgccaccgaa
ttcggtgccgtcgagcatctcgaacggatgctcagcctcgacaacgtcttcgacgaggac
gaactgcgcgcgtggctctcgcgcgccgaggtcgagaccggcactcaccccgattatctg
tgcgaggtgaagatcgacggcgtggcgctcagcctcgtctacgagaacggcaaactcgtc
cgcgcggccacccgcggcgacggacgcaccggggaggacgtcaccctcaacgcccgcacg
atcgacgacgttcccgaaaagctcaccggcaccgccgaatacccgatcccgacgttgctc
gaagtgcgcggcgaggtgttcttccggctcgaggacttccagaccctcaacgccgggctg
gtggccgaagacaagccgcccttcgcgaatccccgcaattccgccgccggttccctgcgg
cagaagaacccggccgtcaccgcgcgccggcgtctgcgcatgtactgccacggctacggc
cgcatggagggcttcgaaccccgctcgcaatccgacgcctacgcggccttcgcggcctgg
ggcctgcccgtctcaccgcacactgttcgcgtgcagggcgccgaggcggtcgtcgagcgg
atgcgctactggggcgaacaccgccacgacatcgaacatgagatcgacggcctggtggtc
aagatcgacgacatggggctgcaccgacgcctcggtgccacgtcccgcgccccacggtgg
gcgatcgcctacaagtacccgccggaggaggtcaccaccaagctcctcgacatccgcgtc
agtgtcgggcgcaccggacgcgtgacccccttcgcctacatggagccggtcaccgtcgcc
gggtccaccgtctcgctggcgacgctgcacaacgcgtccgaggtggagcgcaaaggcgtg
ctcatcggcgacaccgtggtcatccgcaaggccggcgacgtgatcccggaggtcctcggc
ccggtcgtcgacctgcgcgacggttccgagtacgccttcgagatgcccacgcagtgcccc
gaatgcggtaccaccctcgccccggcgaaggagggcgacgtcgacctgcgctgccccaac
tcgcggtcgtgcccggcgcaattgcgcgagcgggtcttccacgtctcgggcaggggagcg
ttcgacatcgaagccctcggctacgaggcggccacggcgctgctcgaggggaagatcatc
gccgacgagggcgacctgttctcgctcacgaaggaagacctcgaacgcatcgcgtttttc
cgcaccaccaagggcgtgctgtcgaagaacggcgaacgtctgctgcagaacctcgacaag
gcgaaggaacagccgctctggcgcgtgctggtcgccctgtccatccggcacgtcggaccg
accgctgcgcgtgcgctggccaccgagttcggcagcctcgaccggatccgggccgcgtcc
gtcgacgagctcgcggccgtcgagggcgtcggaccgacgatcgccgcggcggtgaccgac
tggttcaccgtcgattggcacgtcgcgatcgtcgacaagtgggcggcagcgggtgtccgg
atggccgacgaacgcgacgaatcgatcccgcgaaccctcgaaggactgtcgatcgtggtt
acgggcacgctcgcgggattctcccgcgaccaggccaaggaggccgtcctcgcgcgcgga
ggcaaggccgccggatcggtgtcgaagaagacggctttcgtcgtcatcggcgacaacccg
ggttcgaaggccgacaaggccgccgatctcggagtacccgtgctcgacgaggacggtttc
cggatcctgctcgacgaggggcccgacgccgctcgcgcctatctcgaagggcgcgaaggg
gaggactga

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