KEGG   Pseudorhizobium banfieldiae: NT26_1288
Entry
NT26_1288         CDS       T04765                                 
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
rht  Pseudorhizobium banfieldiae
Pathway
rht03030  DNA replication
rht03430  Mismatch repair
rht03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rht00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    NT26_1288 (dnaE)
   03430 Mismatch repair
    NT26_1288 (dnaE)
   03440 Homologous recombination
    NT26_1288 (dnaE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rht03032]
    NT26_1288 (dnaE)
   03400 DNA repair and recombination proteins [BR:rht03400]
    NT26_1288 (dnaE)
Enzymes [BR:rht01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     NT26_1288 (dnaE)
DNA replication proteins [BR:rht03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     NT26_1288 (dnaE)
DNA repair and recombination proteins [BR:rht03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     NT26_1288 (dnaE)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon DUF655 HROB
Other DBs
NCBI-ProteinID: CCF19012
UniProt: L0NFC0
Position
1283121..1286609
AA seq 1162 aa
MAEQMETTGATNGEPSPRFVHLRVHSAYSLLEGALPLKKILAKAVADGQPAIAVTDTNNL
FVALEFAQKAIGEGLQPIIGCQVSIDMEDQAEDRRGNQMTKLPAIVLLASTADGYERLVD
LVSRAYLGGEGHASTHIRRSWLDDTGTEGLIALTGASGGPIDVTLREGNSSQARSRLLSL
REAFGDRLYVELQRHGAYDRRHEHKIVSLAYEFDLPLVATNEAFFPSRDDYDAHDALMAV
AHNAIVSDDSRFRLTPDHYLKSRAEMAALFADLPEALDNTVEIARRCSFILDTRKPILPR
FTGATADPEEAERAEAEELRRQSVEGLERRMAALGLSPGYTEQDYRKRLDFELSVIERMK
FPGYFLIVSDFIKWAKQNNIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPER
VSMPDFDIDFCQDRREEVIRYVQQKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQV
DRICKLVPNNPANPTPLSKAIEEEPKLQEEAEKEPVVARLLDIAQKIEGLYRHASTHAAG
IVIGDRPLSKLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDYVSK
RGIHVDLASIPLDDEKTYEMLSRGETIGVFQVESAGMRKALIGMRPDCIEDIIALVALYR
PGPMENIPVYNARKHGEEEIESIHPKIDYLLKETQGVIVYQEQVMQIAQVLSGYSLGEAD
LLRRAMGKKIKEEMDKQRARFVDGAMKNGVSKPQADLIFDLLAKFANYGFNKSHAAAYAI
VSYQTAFMKAHYPAEFLAASMTFDMANTEKLNDFRQDAARLGITVVPPSVQTSFRRFETD
DNRIFYALAAIKGVGEAAVDHIVEVRGDRPFASIEDFCLRIDPKQINRRVLESLICAGAF
DCFGRDRAEMIAGLDRIIGYAQRAQENKTSGQSDMFGSSSAAGPETLIFPPFSPWVPSEK
LMREYQVLGFYLSAHPLDSYGDVLAKMRVQNFAEFSAAVKKGATAGRLAGTVTGRQERKT
RTGNKMGIVTFSDASGQFEAVLFSEALAQYRDLLEPGKSLVITVQADERPEGIGLRIQTA
ASLEEQSVRMQKALRVYVRDSGPLKTVTRHLNARGDGLVSFIVIKDDGQREIEVELAEKF
RISPEIAAALRAAPGVLEVELV
NT seq 3489 nt   +upstreamnt  +downstreamnt
atggccgagcagatggaaaccactggtgcaacgaacggggagccttcgcctcggttcgtt
catctgcgggttcattccgcctattcgctgctcgaaggcgcattgccgctcaagaagatc
cttgcgaaggctgtggccgatggtcagccggcgatagccgtcacggacaccaataatctc
ttcgtcgcgctggaattcgcgcagaaggccatcggtgagggccttcagccaatcatcggg
tgccaggtctccatcgacatggaggatcaggccgaggatcgtcgtggcaaccagatgacg
aagctgccggcgatcgtgcttctggcgtctacggctgacggctacgagcggctggtggac
ctcgtcagtcgcgcctatctcgggggcgaaggccatgccagcacgcatatccgccgctcc
tggctcgacgacacggggaccgagggactgattgccttgaccggggcgtccggcggtccg
atcgacgtcacgctgcgcgaaggcaattccagtcaggcgagatcgcggctcctcagcctc
agggaggcgttcggtgaccggctctatgtggaactgcagcgccacggcgcctatgaccgt
cgccacgagcacaagatcgtcagccttgcctacgagttcgatctgccgttggtcgccacc
aacgaagcctttttcccgtcgcgcgacgattatgacgcccacgacgctctgatggcggtg
gcccacaatgcgatcgtgtccgacgacagccgcttccggctgaccccggaccactatctg
aagagccgtgccgagatggcggcactcttcgccgatctgccggaagcgctggacaacacg
gtggagatcgcccggcgctgttcattcatcctcgatacccgcaagccgatcctgccacgc
ttcacgggtgcgacggctgatccggaggaagccgaacgggccgaggcagaggaactgcga
cggcaatcggtggagggcctcgaacggcgaatggcggcgctcggcctcagccccggctat
acggagcaggactaccgtaagcgcctggacttcgaactgagcgtcatcgagaggatgaag
ttcccaggctacttcctgatcgtctcagacttcatcaaatgggcgaagcagaacaacatt
cccgttggtccgggccgtggatcaggcgccggttcgcttgtcgcctatgcgctgacgatc
acggacgtcgatccgctgcgcttctcgctgctgttcgagcgcttcctcaacccggaacgc
gtctcgatgcccgacttcgacatcgacttctgccaggaccggcgcgaagaggtgatccgc
tacgtccagcagaaatacggccgtgagcaggtggcccagatcattacattcggatcgctg
caggcccgcgcggcgctgcgcgacgtcggtcgggtgctcgaaatgccctacggccaggtg
gacaggatctgcaagctggtgccgaacaatccagccaatccgacgccgctctccaaggcg
atcgaggaggagcccaagctgcaggaagaggcagagaaggagcccgtggttgcacgcctt
ctcgacatcgcccagaaaatcgagggactttatcggcacgcctcgacgcacgccgccggc
atcgtgatcggggatcggccgctctccaagctcgtgccgatgtaccgcgatccgcgctcc
gacatgccggtcacccagttcaacatgaaatgggtcgaacaggcaggcctggtgaagttc
gacttcctcgggctgaagacgttgaccgtgttgaaaactgcggtcgactacgtctccaag
cgcggcatccacgtggacctcgcctcgataccactggatgacgagaagacctacgaaatg
ctctcccgtggcgagacgatcggcgtgttccaggtggaaagtgccggcatgcgcaaggcg
ctgatcggaatgcggccggactgcatcgaggacatcatcgcgctcgttgcactctatcgc
cccggcccgatggagaacattccggtctacaatgcccgcaagcacggcgaagaggagatc
gagtcgatccatccgaagatcgactatctcctgaaggaaacccagggcgttatcgtctac
caggaacaggtgatgcagatcgcccaggtcctgtcgggttactcgctcggcgaagccgat
cttctgcgccgcgccatgggcaagaagatcaaggaggagatggacaagcagcgtgcacgt
ttcgtcgatggtgccatgaagaatggcgtgtcgaagccgcaggctgacttgatcttcgac
ctgctcgcgaagttcgccaactacggcttcaataagtcgcacgccgccgcctacgccatc
gtctcctaccagacggccttcatgaaggcccactatcccgccgagttcctggccgcgtcg
atgaccttcgatatggcgaacaccgagaagctgaacgacttccggcaggatgcggcccgc
ctcggcattacggtcgtgccgccatcggtgcagacctcgttccgccgtttcgagaccgac
gacaacagaatcttctacgccctggcggccatcaagggtgtcggcgaggccgcagtcgat
cacatcgtcgaggttaggggcgacaggcctttcgcctcgatcgaggatttctgcctacgg
atcgacccgaagcagatcaaccgtcgcgtgctggaaagccttatttgcgccggtgccttc
gattgcttcgggcgggatcgggcggagatgattgctggcctcgaccgcatcatcggctat
gcgcagcgtgcgcaggaaaacaagacgagcggccagtctgacatgttcggatcatcctcc
gcagcaggtcctgaaacgttgattttcccgcctttctcgccctgggttccttcggagaag
ctgatgcgggagtaccaggttcttggcttctacctgtccgcccacccgcttgattcctat
ggcgatgtgctggcgaagatgcgcgtccagaactttgcggaattctccgctgccgtgaag
aagggcgcgactgccgggcgacttgcaggaacggtgaccggacgccaagagcgcaaaacc
cgcaccggcaacaagatggggatcgtcaccttctccgatgcctcaggtcagttcgaggca
gtgctcttctccgaagcgctggcgcagtatcgtgaccttctcgagcctggcaaatccctg
gtgatcaccgtacaggccgatgagcgtcccgagggtatcggccttcgcatccagacggcc
gcgtccctggaggagcagtcggtacgaatgcagaaggcgctgcgggtctatgtacgggat
tcgggtcccctgaagacggtgacgcgtcaccttaatgcaaggggggacgggctggtctcc
ttcatcgtcatcaaggatgatggccagcgcgagatcgaggtggagctcgcggagaaattc
cggatttcgccggagattgccgccgccctcagggcggcgccgggggtcctagaggtcgaa
ctcgtatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (20)   

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