KEGG   Rhodococcus sp. PBTS 1: A3Q40_00350
Entry
A3Q40_00350       CDS       T05182                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
rhu  Rhodococcus sp. PBTS 1
Pathway
rhu03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rhu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    A3Q40_00350 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rhu03021]
    A3Q40_00350 (rpoC)
   03400 DNA repair and recombination proteins [BR:rhu03400]
    A3Q40_00350 (rpoC)
Enzymes [BR:rhu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     A3Q40_00350 (rpoC)
Transcription machinery [BR:rhu03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     A3Q40_00350 (rpoC)
DNA repair and recombination proteins [BR:rhu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      A3Q40_00350 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: AMY17760
UniProt: A0A143Q3P6
Position
341279..345235
AA seq 1318 aa
MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVDDELRHNELSTLEAEMEVEKKAVADQRDADLEARAQKLEAD
IAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLEEIWSTFTKLAPKQLIVDELI
YRELVDRYGEYFTGAMGAESIQKLMETFDIEAEAESLRETIRSGKGQKKLRALKRLKVVA
AFQSTGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
AQVWDVLEEVIGEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARVLMLSSNNILSPASGRPLAMPRLDMVTGLFHLTRLDETAKGQLS
PATGEGPEQGIYASPAEAQMAVDRGVLTVQSPIKVRLTNQRPSRELEAELFPEGWAPGDA
WTAETTLGRVLFNELLPANYPFVNEQMPKKRQATIINDLAERYPMIVVAQTVDKLKDAGF
YWATRSGVTISISDVLMPPEKAEIMESFEAQADQIERKYQRGALDHTERNSALVKIWQEA
TEQVGKAMEAHFPDDNPIPMIVKSGAAGNMTQVRSLAGMKGLVTNPKGEFIPRPIKSSFK
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTERGITTTI
AEKLADGTMIRDAHVETSTYARTLAADAVDADGNVVVERGHDLGDPAIDALLAAGITTVK
VRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVA
GDDITGGLPRVQELFEARVPKGKAPIADVSGRIQLEEGDRFYKITIVPDDGGEEVVYDKL
SKRQRLRVFKHDDGTERLLSDGDHVEVGQQLMEGAADPHEVLRVMGPRQVQIHLVNEVQE
VYRSQGVSIHDKHIETIVRQMLRRVTIIDSGSTEFLPGSLTERSEFEASNRRVVSEGGEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIPA
GTGINRYRNITVQPTEEARAAAYAVPSYDDQYYSPDGFGQNTGAAVPLDDYGFSGDFR
NT seq 3957 nt   +upstreamnt  +downstreamnt
gtgctggacgtcaacttcttcgatgaactccgcatcggtctcgcgaccgcggacgacatc
cgcaactggtcctacggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
ccggagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgcgagcgctgtggcgtc
gaggtcacgcgcgccaaggtgcgtcgtgagcgcatgggccacatcgagctggccgccccg
gtcacgcacatctggtacttcaagggtgtgccgtcgcggctgggctacctgctcgacctg
gcgccgaaggatctcgagaagatcatctacttcgccgcctacgtcatcacctcggtggac
gacgagctccgccacaacgagctctcgaccctcgaggccgagatggaggtcgagaagaag
gccgtcgccgatcagcgcgacgccgatctcgaggcccgcgcgcagaagctcgaggcggac
atcgccgagctcgaggccgagggtgccaagtccgacgtgcgccgcaaggtcaaggacggc
ggcgagcgcgagatgcgtcagctccgtgaccgcgcgcagcgtgagctggatcgtctcgag
gagatctggtccaccttcaccaagctggcgccgaagcagctcatcgtcgacgagctgatc
taccgcgagctggtcgaccgctacggcgagtacttcacgggcgcgatgggcgcggagtcc
attcagaagctcatggagaccttcgacatcgaggccgaggccgagtcgctgcgcgagacc
atccgcagcggcaaggggcagaagaagctccgcgccctcaagcgtctcaaggtcgtggcc
gcgttccagtccaccggcaactcgccgatggggatggtcctcgacgccgtgccggtgatc
ccgccggagctgcgtccgatggtccagctcgacggtggccgcttcgccacctcggacctc
aacgacctgtaccgccgcgtcatcaaccgcaacaatcgcctcaagcgactgatagacctc
ggtgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtccgtcgacgcc
ctgttcgacaacggtcgtcgcggccgcccggtcaccggaccgggcaaccgcccgctgaag
tcgctgtccgatctgctcaagggtaagcagggccgcttccgtcagaacctgctgggcaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgccgaagctcatggcactcgagctgttcaagccgttcgtgatgaagcgtctg
gtcgatctgaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgtcagcgt
gcccaggtgtgggacgtcctcgaagaggtcatcggcgagcaccccgtgctgctgaaccgc
gcccccacgttgcaccgcctcggtatccaggcgttcgagccgcagctcgtcgagggcaag
gccatccagctgcacccgctcgtctgcgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctgtcggcggaggcgcaggccgaggcccgcgtgctgatgctg
tcgtcgaacaacatcctctcgccggcgtcgggtcgtccgctcgccatgccgcgtctggac
atggtgacgggtctgttccacctgacccgtctcgacgagaccgccaagggtcagctgtcg
ccggccaccggtgagggccccgagcagggcatctacgcgagcccggccgaggcacagatg
gccgtcgaccgcggtgtgctcacggtgcagtcgcccatcaaggtgcggctgaccaatcag
cgcccctcgcgggagctcgaggccgagctgttccccgagggctgggcgccgggcgacgcc
tggaccgccgagaccacgctgggccgcgtgctcttcaacgagctgctgccggcgaactac
ccgttcgtcaacgagcagatgccgaagaagcgtcaggcgacgatcatcaacgatctcgcc
gagcggtacccgatgatcgtggtcgcgcagaccgtggacaagctcaaggacgcgggcttc
tactgggccacgcggtcgggcgtcaccatctccatctccgacgtgctcatgccgccggag
aaggcggagatcatggagtcgttcgaggcgcaggccgatcagatcgagcgcaagtaccag
cgcggcgcgctcgaccacaccgagcgcaactcggctctggtcaagatctggcaggaagcg
accgagcaggtcggtaaggccatggaggcccacttccccgacgacaaccccatcccgatg
atcgtgaagtccggcgccgccggaaacatgactcaggtgcggtcgctcgccggcatgaag
ggtctggtgaccaacccgaagggcgagttcatcccgcgtccgatcaagtcctccttcaag
gagggcctgacggtcctcgagtacttcatcaacacgcacggtgcccgtaagggtctggcc
gacaccgcgctgcgtaccgccgactcgggctacctgacccgccgtctggtggacgtgtcg
caggacgtcatcgtgcgcgaggtggactgcgggaccgagcgcggcatcaccacgaccatc
gcggagaagctggccgacggcacgatgatccgggacgcgcacgtcgagacctcgacgtac
gcccgcaccctggccgcggacgcggtcgacgccgacggcaacgtcgtcgtcgagcgtgga
cacgacctgggcgacccggccatcgacgcactgctcgcggccggcatcaccacggtcaag
gtgcgctccgtgctcacctgcaccaccggcacgggcgtctgcgccacctgctacggccgc
tcgatggccaccggcaagctggtcgacatcggcgaggccgtcggcatcgtcgccgcccag
tccatcggtgagcccggcacgcagctgaccatgcgtacgttccaccagggtggtgtggcc
ggcgacgacatcaccggtggtctgccccgcgtgcaggagctcttcgaggctcgtgtgccc
aagggcaaggcgcccatcgcggacgtctcgggtcgcatccagctggaggagggtgatcgc
ttctacaagatcaccatcgttccggacgacggcggtgaagaggtcgtctacgacaagctc
tcgaagcgtcagcgtctgcgtgtgttcaagcacgacgacggcaccgagcgcctgttgtcg
gacggcgaccacgtggaggtcggccagcagctcatggaaggtgctgccgatccgcacgag
gtcctgcgtgtcatgggcccgcgtcaggtgcagatccacctcgtcaacgaggtccaggag
gtgtaccgcagccagggtgtgtccatccacgacaagcacatcgagacgatcgtgcgccag
atgctccgccgcgtgaccatcatcgattcgggctccacggagttcctgcccggatcgctg
accgagcgcagcgagttcgaggcgagcaaccgtcgcgtcgtgtccgagggtggcgagccc
gcggccggacgtccggtgctgatgggtatcaccaaggcatcgctggcgaccgactcgtgg
ctgtccgcggcgtcgttccaggagaccactcgcgtgctgaccgacgcggcgatcaactgc
cgctcggacaagctgatcggtctcaaggagaacgtgatcatcggcaagctgatcccggcc
ggcaccggcatcaaccggtaccggaacatcacggtgcagcccactgaggaggcacgggcc
gcggcctacgcggtgccgtcgtacgacgatcagtactacagcccggacggcttcggccag
aacaccggtgctgccgtaccgctcgacgactacggcttctcgggcgacttccggtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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