KEGG   Rhizobium sp. S41: BA939_01250
Entry
BA939_01250       CDS       T05451                                 
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
rhv  Rhizobium sp. S41
Pathway
rhv03030  DNA replication
rhv03430  Mismatch repair
rhv03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rhv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BA939_01250
   03430 Mismatch repair
    BA939_01250
   03440 Homologous recombination
    BA939_01250
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rhv03032]
    BA939_01250
   03400 DNA repair and recombination proteins [BR:rhv03400]
    BA939_01250
Enzymes [BR:rhv01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     BA939_01250
DNA replication proteins [BR:rhv03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     BA939_01250
DNA repair and recombination proteins [BR:rhv03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     BA939_01250
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon DUF655
Other DBs
NCBI-ProteinID: ANV22695
Position
1:252610..256110
AA seq 1166 aa
MGDTVVRAETSDENLNTPGFVHLRVHSAYSLLEGALPLKKIMSKAVSDGQPAIAITDTNN
LFVALEFSEKARDEGLQPIIGCQLSIDMQDAAEDRRNHNSHLQKLPAIVLLAADAEGYER
LVDLVSRAYLEGEGSGHSVHITRAWLEEDSNAGLIALTGASGGPVDMALREGHAAQAKER
LLTLKSLFGDRLYIELQRQSGYDRSHERRMIGLAYDHDIPLVATNEAFFPSKADYEAHDA
LMAVAHNAIVSDDSRFRLTPDHYLKSREEMTALFADLPEALDNTVEIALRCSYVLKKRGP
ILPRFTGASDDPEAAERAEAEELRRQAVEGLDQRLAALGMAPGYTEQDYRERLDFELGVI
SRMKFPGYFLIVADFIKWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFL
NPERVSMPDFDIDFCQDRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMP
YGQVDKICKLVPNNPANPTPLSKAIEEEPRLQEEADREPVVARLLDIAQKIEGLYRHAST
HAAGIVIGDRPLSKLVPMYRDPRSDMPVTQFNMKWVESAGLVKFDFLGLKTLTVLKVAVD
FVAKRGIKVDLAAIPLDDAKTYEMLSRGETIGVFQVESAGMRKALIGMRPDCIEDIIALV
ALYRPGPMENIPVYNARKHGEEELESIHPTIDHLLKETQGVIVYQEQVMQIAQVLSGYSL
GEADLLRRAMGKKIKEEMDKQRERFVDGAIKNGVSKPQADTIFDLLAKFANYGFNKSHAA
AYAIVSYQTAYMKAHYPVEFLAASMTLDMANTEKLNDFRQDAGRLGIEIVAPSVQTSFRQ
FETGENRIYYSLAAIKGVGEGAVEHIVAIRGDKPFTSLEDFCLRIDPKQINRRVLESLIN
AGAFDCFGRDRAELIGGLDRIIGYAQMAQNNRTIGQSDMFGSGGGNGPEKLVLPAFQPWL
ASEKLLREYQVLGFYLTAHPLDTYRPVLEKLRVQNFADFSAAVKQGATAGRLAGTVTGKQ
ERKTRTGNKMGIVTFSDASGQYEAVLFSEGLGQYRDLLEVGKSLVITVQAEERPEGIGLR
IQTAQSLEEKSVQMQKALRVYVRDSGPLKTVARHLNTRGDGSVYFIVIKDEGSREIEVEL
TEKYRISPEIAAALRSAPGVVDVELV
NT seq 3501 nt   +upstreamnt  +downstreamnt
atgggcgatacggttgtgcgggcagaaacctctgacgaaaacctgaacaccccgggtttc
gttcatcttcgggttcattccgcttactccctgcttgaaggggctctgcccctcaagaaa
atcatgtccaaggccgtttcagacggccagccggccattgccattacagataccaacaac
ctcttcgttgcgctggagttttccgaaaaggcgcgggatgagggtttgcagcccatcatc
ggctgccagctgtcgatcgacatgcaggatgcggcggaggatcgccgcaaccacaacagc
caccttcagaaacttcccgctatcgttcttctcgccgccgatgccgaagggtatgagcgg
ctggtggatcttgtgagccgtgcctatcttgagggcgagggcagtggccattccgtgcac
attacccgcgcatggcttgaagaggactcaaatgcgggcttgatcgcgctgaccggcgct
tccggcggcccggtggatatggccttgagggaaggtcatgccgcccaggcgaaggaacgg
ctgctgacactgaagtcactcttcggtgaccggctttatatcgaattgcagcgtcagtcc
gggtatgaccgttcgcatgagcggcgtatgatcggcctcgcttatgaccatgatattccg
ctggttgccacaaacgaggcgttctttccgtcaaaggccgactacgaagcgcatgacgcg
ctgatggcggtggcgcataatgccattgtttcggacgacagccgctttcgcctgacgccc
gaccattacctcaaaagtcgagaagaaatgacggcgttgtttgcagacctgccggaggcg
ctggacaataccgtcgagattgcgttgcgctgctcttatgtgctgaagaagcgcgggcct
atcctgccacgtttcaccggcgccagcgatgatcctgaggcggcggaacgcgccgaagcg
gaagagcttcgacgtcaggcggtggaggggctggatcagcgccttgccgcgctcggtatg
gcgcccggttatacggaacaggattatcgcgagcggctcgatttcgagctcggcgtcatc
tcgcgcatgaagttccccggttatttcctgatcgttgccgacttcatcaaatgggccaag
cagcacgatatcccggtcggaccgggccgtggttcgggcgcgggttcgctcgtcgcttac
gcgctgacgattaccgatgtcgatccgctgcgtttctcactgctgttcgaacgcttcctt
aatcctgaacgcgtgtcgatgcccgacttcgacatcgatttctgccaggatcgtcgtgaa
gaagtgatccgctacgttcaggccaaatacggccgcgagcaggttgcgcagatcatcacc
ttcggctcgctccaggcgcgcgcggccctgcgcgacgtcggccgcgtgctggaaatgccc
tacgggcaggtggacaagatctgcaagctggtgcccaacaacccggccaatccgacgccg
ctttcgaaggcgatcgaggaggagccgcgcctgcaggaagaagcggacagggagcccgtt
gtcgcgcgcctgctggatatcgcccagaagatcgaggggctttatcgccacgcctcaacc
catgctgccggtatcgtcatcggcgaccgcccgctgtcgaagctggtgccgatgtatcgc
gatccgcggtccgatatgccggtcacccagttcaacatgaagtgggttgaaagcgccggc
ctcgtcaaattcgactttcttggcctgaaaacgctgacggtgctgaaggtggccgtcgat
tttgtcgccaagcgcggcatcaaggtggatctcgccgccatcccgctcgatgacgccaag
acgtatgaaatgctgtcgcgcggtgagaccatcggcgtgttccaagtggaaagtgccggc
atgcgcaaggcgctgatcggcatgcggccggactgcatcgaggatatcattgctctggtg
gcactatatcgtcccggcccgatggaaaacatccccgtttataacgcccgcaaacatggc
gaagaagagctggagtcgatccacccgaccatcgaccatctgctgaaggaaacacagggc
gttatcgtttatcaggaacaggtgatgcagatcgcccaggttctgtcgggttattcgctt
ggcgaagccgatcttctgcgccgcgccatgggtaagaagatcaaggaggaaatggacaag
cagcgcgagcgcttcgttgatggcgccatcaagaacggtgtctcgaaaccgcaggccgac
accatcttcgatctcctcgcaaaatttgccaattacggcttcaacaagagccatgccgcg
gcctatgccatcgtctcctaccagacggcctatatgaaggcgcattatccggtggagttc
ctggcggcctccatgacgctcgatatggccaatacggaaaagctcaacgatttccgtcag
gacgccggtcgtctcggcattgaaatcgtcgcgccgtccgtccagacatcgttccgccag
ttcgaaacgggcgagaaccgcatttattattcgttggctgccatcaagggtgttggcgaa
ggagcggtcgaacatatcgtcgcgatccgcggcgacaagccgttcacgagcctcgaggat
ttctgcctgcgcatcgaccccaagcagatcaaccgtcgtgtgctcgagagtctcatcaat
gccggtgctttcgattgtttcggccgcgaccgcgcagagctgatcggcgggctggaccgt
atcatcggttatgcccagatggcgcagaacaaccgcaccatcggccagtcggacatgttc
ggctcgggcggcggcaatggcccggaaaagctggtgcttcctgccttccagccctggctt
gcctcggaaaagctgctgcgcgaatatcaggttctcggtttctacctcacggcccacccg
ctggatacctatcgccccgtactggaaaaattgcgcgtgcagaatttcgccgatttttcc
gctgctgtgaaacagggggcgactgccgggcgtcttgccggcaccgttaccggcaaacag
gagcgaaagacgcgcaccggcaacaagatgggtatcgtcaccttctcggatgcttcaggg
caatatgaggcggtgttgttttccgaaggtctcggccagtaccgcgacctgcttgaggtc
ggcaagtcgttggtgatcacggtgcaggcggaagagcgccctgaaggtatcggtctgcgc
atccagacggcgcagtcgctggaagaaaaatccgtgcagatgcagaaggcactgcgtgtt
tatgtgcgtgattccggcccgctgaaaacggttgcccgccacctcaacaccaggggtgac
ggctcggtctatttcatcgttatcaaggatgaggggagccgcgagatcgaggtcgaactg
acggagaaataccgtatttcgcctgaaatagccgctgctcttcggtcagcccccggtgtc
gttgatgtggaactggtgtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (18)   

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