KEGG   Rhizobium sp. S41: BA939_02595
Entry
BA939_02595       CDS       T05451                                 
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rhv  Rhizobium sp. S41
Pathway
rhv03410  Base excision repair
rhv03430  Mismatch repair
rhv03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rhv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    BA939_02595
   03430 Mismatch repair
    BA939_02595
   03440 Homologous recombination
    BA939_02595
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rhv03400]
    BA939_02595
DNA repair and recombination proteins [BR:rhv03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     BA939_02595
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     BA939_02595
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BA939_02595
SSDB
Motif
Pfam: DHH DHHA1 RecJ_OB
Other DBs
NCBI-ProteinID: ANV22931
Position
1:complement(517402..519204)
AA seq 600 aa
MMEPADTVARAFLSVERSATEQRWVSRLDQAGQNRALAMSQVHGIPELIARVLAGRGVGV
DDALAFLDPTIRSLMPDPHVLTDCEKAAERLVRAIEAGEKVAIFGDYDVDGAASSALMYR
FLAHFGLTPEIYIPDRIFEGYGPNPAAMQQLAANGATLIVTVDCGSTSHESLKAAKEART
DVVVIDHHQVGTELPPAVALVNPNREDDLSGQGHLCAAGVVFLVLVATLRVLKDRRHRQA
FTLDLLSLLDIVALATVCDVVPLKGLNRAYVVKGLIAARHMKNAGLAALFKKAGLGGPVT
PYHFGFLIGPRINAGGRIGDAALGSRLLTIDDSSQAEVIAERLDELNRERQAMEAAMLAE
AEAEALFEYGDGSGAGVIVTARENWHPGIVGLLASRLKDRFRRPAFAIAFDPSGKGTGSG
RSIAGFDMGRMVRAAVEAGLLVKGGGHAMAAGLTVERANLGKLRTFFEEAAAKTVNELVE
SSVLKIDGAIGASGATLQLVDQLEQAGPYGSGHSQPIFAVPAHRLRDVRLVGTSHVKITL
EAMDGSRLDGIAFRAAEAPLGQMLMNARGRNIHVAGTVGADLWQGQRRVQLRVLDAAFAP
NT seq 1803 nt   +upstreamnt  +downstreamnt
atgatggagccggccgataccgtggcccgcgcatttttaagcgtggagcggtcggcaaca
gaacagcggtgggtgtctcggctggatcaggccgggcagaaccgtgcgctggccatgtcc
caggtccacggtattccggaactgatcgcccgggtgctcgccgggcgcggtgtaggggtg
gacgatgccctggcgttccttgatcccaccattcgctccctgatgcccgacccgcatgtg
ctgaccgattgcgagaaggccgccgagcggcttgtgcgcgccattgaagcgggtgagaag
gtggcgatcttcggtgattacgatgtcgacggcgctgcttcctccgcgttgatgtaccgg
tttcttgcacatttcgggctgacgcccgagatctacattcccgaccgaattttcgagggt
tatgggcctaacccggcggcgatgcagcagctggccgccaatggcgcgacgctgatcgtg
acggtggactgcggatccaccagccatgaatcgctcaaggcggcaaaagaggcacgaacg
gacgttgtggtcatagaccaccatcaggtgggtacggaactgccgccggcggtggcgctg
gtcaatcccaaccgggaggacgatctgtcggggcaggggcatctctgtgccgctggcgtg
gtgttcctcgtgctcgtcgccacgcttcgcgttctcaaggacaggcggcaccgccaggcc
ttcacgctcgatctgctgtcattgctcgacatcgttgcgcttgcgacggtctgcgatgtg
gttcccctgaaagggctgaaccgcgcctatgtggtgaagggcctgattgccgcacgccac
atgaaaaatgccggccttgccgcgctgttcaagaaggcggggctgggcgggcctgtgaca
ccctatcatttcggtttcctgatcggaccccgcatcaacgccggggggcgtattggcgac
gctgcgcttggcagccgattgttgacgatcgatgattcctcgcaggccgaggtgattgcc
gagcggctggacgagctgaaccgcgagcgacaggcgatggaagcggcgatgcttgcggag
gccgaagcggaggccctgttcgaatatggcgacggctcgggtgccggtgttatcgtcacc
gcgcgtgaaaactggcatcccggcattgtcggcttgttggcctcgcgcctgaaggatcgc
ttccgccgcccggcttttgccattgccttcgatccctccggcaagggcaccggctccggc
cgttcgatcgccggcttcgacatggggcggatggtgcgcgctgccgtggaggccggcctg
ctggtcaagggcggcggtcacgccatggcggcaggcctgacggttgagcgcgccaatctc
ggcaagctcaggacctttttcgaagaagccgcggcaaagaccgtaaacgagctggtagag
agcagcgtattgaagattgatggcgccatcggcgcttcgggggctacgttgcagcttgtc
gaccagctggaacaggccggtccctatggttccggtcattctcagccgatctttgccgtt
ccggcgcatcgcctgcgtgatgtgcggctggtgggcacatcccacgtcaagatcacgctg
gaggccatggatggctcacggctggacggaatcgcgttccgcgccgccgaggcgcccctg
ggacagatgctcatgaatgcccgcggacggaatattcacgtcgcgggtactgtgggcgcc
gatctctggcaggggcaaaggcgggttcaactgcgtgttctggacgccgctttcgcgccc
tga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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