KEGG   Rhodoferax koreense: RD110_18880
Entry
RD110_18880       CDS       T04721                                 
Name
(GenBank) excinuclease ABC subunit C
  KO
K03703  excinuclease ABC subunit C
Organism
rhy  Rhodoferax koreense
Pathway
rhy03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rhy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    RD110_18880
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rhy03400]
    RD110_18880
DNA repair and recombination proteins [BR:rhy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     RD110_18880
SSDB
Motif
Pfam: UvrC_RNaseH_dom GIY-YIG HHH_5 UVR HHH HHH_2 Thymidylate_kin 5_3_exonuc
Other DBs
NCBI-ProteinID: APW39017
UniProt: A0A1P8JZ33
Position
complement(4056775..4058814)
AA seq 679 aa
MSSLHSEELLAQVSALPALPGVYRYFDKDGAVLYVGKAKNLKKRVSTYFQREQGGTRIGH
MIGQIASMQTTVVRSEAEALLLENNLIKALSPRYNILFRDDKSYPYLKITALPARLPSVP
SPQPQAATYPRVAYYRGAVEKKHRYFGPFPSAWAVKESILLLQKVFRLRTCEDTVFSNRT
RPCLLYQIKRCSGPCVNYIEPAAYAEDVLNAERFLDGETAEVLKGLQDRMMEHAERLEFE
QAAELRNQMSALSTVLHQQTVDNVSDKDVDVLAVKVQGGRACVNLAMVRGGRHLGDRAYF
PTHVEDAVALQAADVEGEGGAVQQPVEVQVLEAFIAQHYIDIPVPPTLITSEPVGKPLLD
ALSSQSGSRLTAVHNPREQRRQWLEMAQKNAGLQLARLLAEEGSQQARTRALVDALDLAP
DELENFRIECFDISHTAGESTQASCVVFHHHKMQNSEYRRYKIEGITPGDDYAAMRQVLT
RRYIKFAQAEPEVLQSPDDGQAVTADAKAAEPDAQAVADALVAPATPATARMPDLVLVDG
GKGQVSMAKSVFETLGLDIGLIVGVEKGEGRKVGLEELVFADGRHKATLARDSAALMLVA
QIRDEAHRFAITGMRAARAKVRVGGSKLEEIPGVGPKKRASLLQRFGGIRGVAAASVDDI
AKADGISRELAEEIYRALR
NT seq 2040 nt   +upstreamnt  +downstreamnt
atgtccagcttgcattccgaagaactgctggcgcaggtgtctgcgctgcccgccttgccc
ggcgtctaccgctacttcgacaaggacggcgcggtgctgtatgtcggcaaggccaagaac
ctcaagaagcgcgtgagcacctatttccagcgcgaacagggcggcacccgcatcggccac
atgatcggccagatcgcctcgatgcagacgaccgtggtgcgttccgaggccgaggcgctg
ctgctcgagaacaacctcatcaaggccctgagtccgcgctacaacatcctgttccgcgac
gacaagagttatccctacctgaagatcacggcgctgccggccaggctgccttcggtgccg
tccccccagccccaggccgcgacttacccgcgcgtggcctactaccgcggcgcggtcgag
aagaagcaccgctacttcggcccgttcccgagcgcctgggcggtgaaggaatcgatcctg
ctgctgcagaaggtgttccgcctgcgcacctgcgaagacacggtgttcagcaaccgcacg
cggccctgcctgctgtaccagatcaagcgctgctccggcccgtgcgtgaactacatcgag
ccggccgcgtatgccgaggacgtgctcaacgcggagcggttcctcgacggcgagacagcc
gaggtgctcaagggcctgcaggaccgcatgatggaacatgccgaacggctcgaattcgag
caggcggccgagctgcgcaaccagatgtcggccttgtccaccgtgctgcaccagcagacg
gtggacaacgtgtccgacaaggacgtggacgttctcgctgtgaaggtgcagggcgggcgt
gcctgcgtcaacctggccatggtgcgcggcgggcggcacctgggcgaccgggcttacttc
ccgacccatgtggaggatgccgtggcgctgcaggccgccgacgtggaaggcgagggcggt
gctgtgcagcagccggtggaggtgcaggtgctcgaggctttcatcgcccagcactacatc
gacatcccggtgccgcccacgctgatcaccagcgagccggtgggcaagccgctgctcgat
gccctgtcctcgcagagcggcagccggctcaccgccgtgcacaacccgcgcgagcagcgc
cgccagtggctggagatggcgcagaagaacgccggcctgcaactggcgcggctgctggcc
gaggaaggctcgcaacaggcgcgcacgcgggcgctggtggatgcactcgatctcgcaccc
gacgagctggaaaactttcgcatcgaatgtttcgatatctcgcacacggccggggagtcg
acgcaggcctcgtgcgtggtgttccaccaccacaagatgcagaactcggaataccggcgc
tacaagatcgaaggcatcacgccgggcgacgactatgcggcgatgcggcaggtgctcacg
cggcgctacatcaagttcgcccaggccgagcccgaggtgctgcagtccccggacgatggg
caggccgtgacggccgacgccaaggcggcggagcccgatgcgcaggcggtggccgatgcg
ctggtggcgccggccacgccggccacggcccgcatgccggacctggtgctcgtggatggc
ggcaagggccaggtgtcgatggccaagtccgtgttcgaaaccctgggcctggacatcggc
ctgatcgtcggcgtggagaagggcgagggccgcaaggtcggcctggaggaactggtgttc
gccgacggccgccacaaggccacgttggcgcgcgactccgcggccctgatgctggtcgcc
cagatccgcgacgaggcgcaccgcttcgccatcaccggcatgcgcgccgcgcgcgccaag
gtgcgcgtgggcggcagcaagctggaggagatccccggcgtgggcccgaagaagcgcgcc
agcctgctgcagcgcttcggcggcatccgcggcgtggccgcggccagcgtggacgacatc
gccaaggccgacgggatttcgcgcgaactggccgaggaaatctaccgcgccctgcgttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (16)   

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