KEGG   Rhodoferax koreense: RD110_19435
Entry
RD110_19435       CDS       T04721                                 
Name
(GenBank) excinuclease ABC subunit A
  KO
K03701  excinuclease ABC subunit A
Organism
rhy  Rhodoferax koreense
Pathway
rhy03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rhy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    RD110_19435
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rhy03400]
    RD110_19435
DNA repair and recombination proteins [BR:rhy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     RD110_19435
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      RD110_19435
SSDB
Motif
Pfam: ABC_tran UvrA_DNA-bind nSTAND1 AAA_21 DnaJ_CXXCXGXG AAA_29 AAA_16 DUF4350
Other DBs
NCBI-ProteinID: APW39115
UniProt: A0A1P8JZF6
Position
4179648..4182347
AA seq 899 aa
MSSSASASDGAARDGFVRVRGAREHNLKHVDVDIPRDALVVFTGISGSGKSSLAFGTLFA
EAQRRYLESVAPYARRLIDQAGVPDVDAIEGLPPAVALQQQRGTPTARSSVGSVTTLSSL
LRMLYSRAGLYPAQQPMLYAEDFSPNTPQGACPTCHGLGRVYEVTEASMVPDPTLSIRER
AVAAWPTAWQGQNLRDILTTLGHDVDLPWQRLPKKTRDWILFTEEQPTVPVYAGFTREEV
REAIRKKMTPSYMGTFTGARRYVLQTFAKSQSAMMKKRVSQFMVGSLCPTCDGKRLTRAA
LSVTFADLDIGEMARLPLSALAALLAPFARGEMPASDAQEDAHNTRDRAAHRRETARRVQ
AGGSAHAAAPDVRRTPQHSPEKVIAAQRLCADLLGRVATLTDLGLGYLALDRATPTLSPG
ELQRLRLATQLNSQLFGVVYVLDEPSAGLHPADGEALLAALQRLKAAGNSVFVVEHDIAT
MRRADWLVDVGPGAGVHGGQVLYSGPPAGLAQIEASQTRNYLFDSSPRALRVRQKPISWL
TLEGVTRNNLRGVDAAFPIGCLTAVTGVSGSGKSSLVSQALLQLVAAQLGTAAAGAEDGD
DEAAPVPALAALGDDDPGAAEAPLAAATTGRIAGGMAKIRRLVQVDQKPIGRTPRSNLAT
YTGLFDVVRKLFAATPEARKRHFDAGRFSFNVAKGRCATCEGEGFVSVELLFLPSVYAPC
PTCHGARYNAATLQVRWRGIHIAEVLDLTVDAACDIFAEEPAVLRALTVLRDIGLGYLRL
GQPATELSGGEAQRIKLATELQRPQRGHTLYVLDEPTTGLHPADVDRLVAQLDALVRAGN
TVVVVEHEMRVVAASDWVIDVGPGAGDEGGRIVASGTPAEVATAPGSRTAPYLAEALGP
NT seq 2700 nt   +upstreamnt  +downstreamnt
gtgtcttcgagcgccagcgctagcgacggggcggcgcgggacggcttcgtccgcgtccgg
ggcgcccgcgaacacaacctcaagcatgtcgacgtcgacatcccgcgcgacgcgctggtc
gtcttcaccggcatctcgggttcgggcaagtcttcgctcgctttcggaaccctgttcgcg
gaagcgcagcggcgctacctcgaatcggtggcgccctatgcgcgccggctgatcgaccag
gccggcgtgcccgacgtggacgccatcgaaggcctgccgccggccgtggccctgcagcag
caacgcggaacgccgacggcgcggtcttcggtcggcagcgtcaccacgctttccagcctg
ctgcggatgttgtactcgcgcgccggtctgtatccggcacagcagccgatgctctacgcc
gaggatttctcgccgaacacgccgcagggcgcctgccccacctgccacggcctgggtcgc
gtctatgaagtgaccgaagcctcgatggtgcccgacccgaccctcagcatccgcgaacgt
gccgtggccgcctggcccacggcctggcagggccagaacctgcgcgacatcctgaccacg
ctcggccacgacgtggacctgccctggcagcggctgccgaagaagacccgcgactggatc
ctgttcaccgaggaacagcccacggtgccggtctacgccggctttacgcgcgaagaggtg
cgcgaagccatccgcaagaagatgacgcccagctacatgggcactttcaccggcgccagg
cggtacgtgctgcagaccttcgccaagagccagagcgcgatgatgaagaaacgcgtgtcg
cagttcatggtcggcagcctctgccccacgtgcgacggcaaacgcctcacccgcgcggcg
ctgtccgtgacgtttgccgacctggacatcggcgagatggcgcgcctgccgctgtcggcc
ctggcggccttgcttgcgccttttgcccgcggcgaaatgccggcctcggatgcacaagag
gacgcacacaacaccagggaccgcgccgcgcaccgccgcgagacggcgcgccgggtccag
gccggcggctcggcccacgccgccgcgcccgacgtgcggcgcacgccgcagcactcgccc
gagaaggtcatcgccgcgcaacgcctgtgcgccgacctgctcggccgcgtggccacgctc
accgacctcggcctcggctacctggcgctcgaccgcgccacgcccacgctgtcgcccggt
gaactgcagcggctgcgcctggcgacccaactcaattcgcagctgttcggcgtggtctac
gtgctggacgaaccgtcggccggcctgcaccccgcggatggcgaagccttgctggccgcg
ctgcagcggctcaaggccgcgggcaactccgtgttcgtggtcgagcacgacatcgccacc
atgcgtcgcgccgactggctcgtggatgtcggccccggcgccggggtgcacggcggccag
gtgctgtacagcgggccacccgcgggcctggcacagatcgaggcttcacagacccgtaac
tatcttttcgatagctctccacgcgctctgcgtgtgcggcagaagccgatttcatggttg
acactggagggtgtgacgcgcaacaacctgcgcggggtggacgcggcttttcccatcggt
tgcctgacggcggtgaccggggtttccggctcgggcaaatcgagcctggtgagccaggcg
ctgctgcagctggtggccgcgcaactcggcacggcggcagccggcgcggaagatggcgac
gacgaagccgcaccggtgccggcgctcgccgccctgggcgacgacgatccgggcgccgcc
gaggcgccgctggccgctgccaccacgggccgcatcgccggcggcatggcgaagatccgc
cggctggtgcaggtcgaccagaaacccatcggccgcacgccgcgctccaacctcgccacc
tacaccggcctgttcgacgtggtgcgcaagctgttcgccgccacgccggaggcgcgcaag
cgtcacttcgatgcgggccggttttccttcaacgtggccaaggggcgctgcgcgacctgc
gagggagaaggcttcgtgagcgtggagctgctgttcctgccgagcgtctatgcgccctgc
cccacctgccacggcgcgcgctacaacgccgccacgctgcaggtccggtggcggggcatc
cacatcgccgaggtgctggacctcacggtggacgcggcctgcgacatcttcgccgaagag
cccgcggtgctgcgcgcgctgaccgtgctgcgcgacatcggcctgggctatctgcggctg
ggccagccggccacggaactctcgggtggcgaggcgcagcgcatcaagctcgccaccgaa
ctgcagcgcccgcagcgcggccacacgctctatgtgctggacgagcccaccaccggcctg
cacccggccgacgtggaccggctggtggcccagctcgatgcgctggtgcgcgccgggaac
acggtggtggtggtcgagcacgagatgcgcgtggtggcggcgagcgactgggtcatcgat
gtcgggcccggcgccggcgacgagggcggccggatcgtggccagcggcacaccggccgag
gtggccaccgccccgggaagccgcaccgcgccctacctcgccgaggcgctggggccgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (16)   

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