KEGG   Rhodoferax koreense: RD110_24070
Entry
RD110_24070       CDS       T04721                                 
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
  KO
K15792  MurE/MurF fusion protein [EC:6.3.2.13 6.3.2.10]
Organism
rhy  Rhodoferax koreense
Pathway
rhy00300  Lysine biosynthesis
rhy00550  Peptidoglycan biosynthesis
rhy01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:rhy00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00300 Lysine biosynthesis
    RD110_24070
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    RD110_24070
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:rhy01011]
    RD110_24070
Enzymes [BR:rhy01000]
 6. Ligases
  6.3  Forming carbon-nitrogen bonds
   6.3.2  Acid-D-amino-acid ligases (peptide synthases)
    6.3.2.10  UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase
     RD110_24070
    6.3.2.13  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
     RD110_24070
Peptidoglycan biosynthesis and degradation proteins [BR:rhy01011]
 Precursor biosynthesis
  Amino acid ligase
   RD110_24070
SSDB
Motif
Pfam: Mur_ligase_M Mur_ligase_C Mur_ligase QslA
Other DBs
NCBI-ProteinID: APW39902
UniProt: A0A1P8K1K9
Position
complement(5202192..5203691)
AA seq 499 aa
MNVFQQPLEAAHWLRGLVASGSGSLQVDSRRVRPGDAFIAWPGAAVDGRQFIGAALAQGA
VACLIEASGHEAFGFHDERVAGYAGLKASTGPIAAAYFGHPSDSLDVLAVTGTNGKTSTS
WWLAQALSKVKLPAPVPCAVVGTLGVGIPPEVEATGLTTPDPVLLQRQFRRFVDEGIRAC
AIEASSIGVAERRLDGTRIRVGIFTNFTQDHLDYHGGMDAYWTAKAELFAWPGLQAAVLN
VDDSKGAELAATLAGGALDVWSVGIEAEARLRAVEVGYAAQGLSFTVVEGAERHRVQTPL
IGLYNVSNLLGVMGAMRAMGVPLAEVVRACAAVTPVPGRMDCLNAAGQPLVAIDYAHTPD
ALDKALLALRPLASARGGQLWCVFGCGGDRDATKRPLMAAVAEKQADMVVVTSDNPRGEK
PEHIIAQILLGLSHDHCVQVQADRALAIADALAQAQPQDVVLLAGKGHEATQEVAGVKHP
FSDKAEAEMALQRRSGVAP
NT seq 1500 nt   +upstreamnt  +downstreamnt
atgaacgtgttccaacagccgctcgaggccgcgcactggttgcgcggcctggtcgcatcc
gggtccggcagcttgcaggtggacagccggcgggtgcggccgggcgacgccttcatcgcc
tggcccggtgccgcggtcgatggccgccagttcatcggcgccgccctggcgcagggtgcg
gtggcctgtctgatcgaggcgtccggccacgaggctttcggcttccacgacgaacgtgtg
gcgggttacgccgggctcaaggccagcaccgggccgattgccgccgcctatttcggccat
ccgagcgacagcctcgacgtgctggccgtgaccggcaccaacggcaagacctccaccagc
tggtggctggcccaggcgctatcgaaagtgaagctgcccgcgcccgtgccatgcgcggtg
gtgggtactttgggcgtgggaatcccgcccgaggtcgaggccaccgggctgaccacgccc
gacccggtgctgctgcagcggcagttccgccgcttcgtggacgagggcatccgggcctgc
gccatcgaggcttcgagcatcggcgtggccgaacgccggctcgacggcacgcgcatccgc
gtgggcatcttcaccaatttcacgcaggaccacctcgactaccacgggggcatggatgcc
tactggacggccaaggccgaactcttcgcctggcccggcctgcaagccgcggtgctcaac
gtcgacgacagcaaaggcgccgaactggcggccacgctggctggcggcgcgctcgacgtg
tggtcggtgggcatcgaggccgaggcgcggctccgggccgtcgaggtcggttatgccgcc
cagggtttgtccttcaccgtcgtcgaaggcgccgagcgccatcgggtacagacaccgctg
atcggcctgtacaacgtgtccaacctgctcggcgtcatgggtgcgatgcgcgccatgggc
gtgccgctggccgaggtcgtgcgcgcctgtgccgccgtcacgccggtgccgggccgcatg
gactgcctcaatgccgccggccagccgctggtggccatcgactatgcccacacgccagac
gccctcgacaaggctttgctcgcgctccgtccgctggccagcgcgcgcggcggccagctg
tggtgcgtgttcggctgcggcggcgaccgcgatgcgaccaagcgtccgctgatggccgcc
gtggccgagaaacaggccgacatggtcgtcgtcaccagcgacaacccgcgcggcgaaaag
ccggagcacatcattgcccagatcctgctcggcctgagccacgaccactgcgtgcaggtg
caggccgaccgcgcgctggccatcgccgacgcgctggcccaggcgcaaccgcaagacgtg
gtgctgctggccggcaagggccacgaggccacgcaggaagtggccggcgtgaagcatccg
ttctccgacaaggccgaggccgaaatggcgttgcagcggcgcagcggggtggcgccatga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical substance (8)   
   KEGG COMPOUND (8)   
Chemical reaction (4)   
   KEGG ENZYME (2)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (27)   

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