KEGG   Rhodoplanes sp. Z2-YC6860: RHPLAN_44470
Entry
RHPLAN_44470      CDS       T04290                                 
Name
(GenBank) Ribonuclease D
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
rhz  Rhodoplanes sp. Z2-YC6860
Brite
KEGG Orthology (KO) [BR:rhz00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:rhz03016]
    RHPLAN_44470
Enzymes [BR:rhz01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     RHPLAN_44470
Transfer RNA biogenesis [BR:rhz03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    RHPLAN_44470
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC
Other DBs
NCBI-ProteinID: AMN42876
UniProt: A0A127EXC5
Position
5122133..5123278
AA seq 381 aa
MNLITTTDELAAACSRLSSHPFVTVDTEFLRETTYYPLLCVAQMACDDEAVVVDALAPGL
DLAPFFELMGNTRVLKVFHAARQDIEIVWHRAGMIPQPMFDTQVAAMVLGYGDSISYDQL
VQRITGDAIDKSNRFTDWSRRPLTPAQTAYAVSDVTHLRSVYTALLADLGRRARAGWMDD
EMEVLTSPDTYRAEPERAWMRLKTRVRKPKELAVLIEVAAWREREAQTRDVPRSRVLKDD
AIGDIAVQQPITPEKLATLRSLPKGFERSKWGEGIIEAVKRGLARDPKTLPHIERPKPAQ
NGSATVELLKVLLRMTAEKHGVAAKVVATVDDLERIAGDDDADVPALKGWRRDLFGEKAL
ALKHSQLALVIERGRVVAMPL
NT seq 1146 nt   +upstreamnt  +downstreamnt
atgaatctgattacgacgacggacgagctggctgcggcctgttcgcggctctccagccac
ccattcgtaaccgtcgataccgagtttctgcgcgaaacgacctactacccgctgctctgc
gtggcgcaaatggcgtgcgacgacgaggccgtggtggtcgacgcgctggccccgggcctc
gatctggcgccgtttttcgagctgatgggcaatacgcgcgtcctcaaggtcttccacgcc
gcccgccaggacatcgagatcgtctggcaccgcgccggcatgatcccccagccgatgttc
gacacccaggtcgccgccatggtgctgggttatggcgattcgatttcctacgaccagctg
gtgcaacggatcaccggcgacgccatcgacaagtccaaccgcttcaccgactggagccgc
aggcctctgacgcctgcgcagaccgcctatgcggtttccgacgtgacgcatctccgctcg
gtctacacggccctgctggccgacctgggccgccgcgcccgtgccggctggatggacgac
gaaatggaggtcctgacctcgccggacacctaccgcgcggagccggagcgcgcctggatg
cggctcaagacccgggtgcgcaagccgaaggagcttgcggtgctcatcgaggtggcggcc
tggcgcgagcgcgaggcgcagactcgcgacgtgccgcgctcgcgggtgctgaaggacgac
gcgatcggcgatattgccgtgcaacagccgatcacacccgagaagctcgcgacgctgcgc
tcgctgcccaagggtttcgaacgctcgaagtggggcgaaggtatcatcgaggcggtgaag
cgcggtttggcgcgcgatccgaaaacgctgccgcatatcgagcggccgaagcccgcgcag
aacggcagcgccaccgtcgagctgctcaaggtgctgctgcgcatgaccgcggagaagcac
ggcgtcgccgccaaagtcgtcgcgaccgtcgacgatctcgaacgcatcgccggtgacgac
gatgccgatgtgccggcgctcaaagggtggcgccgcgacctgttcggcgagaaggcactg
gcgctcaagcacagccagctcgcactggtgatcgagcgcggccgcgtcgtcgcgatgccg
ctttaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (17)   

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