KEGG   Roseovarius indicus: RIdsm_00524
Entry
RIdsm_00524       CDS       T06222                                 
Symbol
rpoZ
Name
(GenBank) DNA-directed RNA polymerase subunit omega
  KO
K03060  DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
Organism
rid  Roseovarius indicus
Pathway
rid03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rid00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    RIdsm_00524 (rpoZ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rid03021]
    RIdsm_00524 (rpoZ)
   03400 DNA repair and recombination proteins [BR:rid03400]
    RIdsm_00524 (rpoZ)
Enzymes [BR:rid01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     RIdsm_00524 (rpoZ)
Transcription machinery [BR:rid03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     RIdsm_00524 (rpoZ)
DNA repair and recombination proteins [BR:rid03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      RIdsm_00524 (rpoZ)
SSDB
Motif
Pfam: RNA_pol_Rpb6
Other DBs
NCBI-ProteinID: QEW24741
UniProt: A0A0T5NZ64
Position
524424..524777
AA seq 117 aa
MARVTTEDCVDKVPNRFDLVMLAAHRAREISAGSQITVDRDNDKNPVVALREIAEETQSA
DELRERLIESNQTQIEVDEPEDDSMALLMGGEPDKPAEDDMSEENLLRALMEAQGQG
NT seq 354 nt   +upstreamnt  +downstreamnt
atggcccgcgtgacaaccgaagactgcgtcgacaaggttcccaaccggttcgatctggtg
atgcttgccgcccatcgggcgcgcgaaatttccgccggatcgcagattaccgtggaccgc
gacaacgacaagaacccggttgtcgccctgcgcgagattgccgaagagacccagtcggcc
gacgagcttcgcgagcgtctgatcgaatcgaatcagacccagatcgaggtcgacgagccc
gaagacgattccatggcgctgctgatgggtggcgagcccgacaagccggccgaggacgac
atgtcggaagagaaccttctgcgggcgctgatggaggcgcaggggcagggctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (11)   

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