KEGG   Roseovarius indicus: RIdsm_03101
Entry
RIdsm_03101       CDS       T06222                                 
Symbol
uvrA
Name
(GenBank) Excinuclease ABC subunit A
  KO
K03701  excinuclease ABC subunit A
Organism
rid  Roseovarius indicus
Pathway
rid03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rid00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    RIdsm_03101 (uvrA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rid03400]
    RIdsm_03101 (uvrA)
DNA repair and recombination proteins [BR:rid03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     RIdsm_03101 (uvrA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      RIdsm_03101 (uvrA)
SSDB
Motif
Pfam: UvrA_DNA-bind UvrA_inter ABC_tran SMC_N AAA_16 AAA_29 AAA_25 RsgA_GTPase nSTAND1 DnaJ_CXXCXGXG nSTAND3 DUF4350 BCA_ABC_TP_C AAA_21
Other DBs
NCBI-ProteinID: QEW27289
UniProt: A0A0T5PA36
Position
complement(3222020..3224878)
AA seq 952 aa
MAELKHIEVRGAREHNLRSIDVDIPRNELVVITGLSGSGKSSLAFDTIYAEGQRRYVESL
SAYARQFLDMMEKPDVDHISGLSPAISIEQKTTSKNPRSTVGTVTEIYDYLRLLFARVGT
PYSPATGLPIEAQQVQDMVDRVLGMEEGTRAYLLAPIVRDRKGEYRKEFLELRKQGFQRV
KVDGEFHELDDPPKLDKKFRHDIDVVVDRLVVKDNIGTRLADSFRTALDLADGIAVLETS
PKEGEPERHTFSENFACPVSGFTIPEIEPRLFSFNAPFGACPECGGLGAELFFDERLVVP
DEQLRIADGALAPWRKGKSPYFLQTIEAIAKHYEFDRNARWKDLDAHVQQVFLYGSGDEE
IQFRYDEGGRVYQVSRVFEGVIPNMERRYRETDSAWIREEFERYQNNRPCGACGGYRLRD
EALAVKIANLHIGQVVEMSIREAYEWCETVPESLTAQKNEIAKAILKEIRERLGFLNNVG
LDYLTLSRSAGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNGRLLQTLQNL
RDQGNTVIVVEHDEEAIRTADYVFDIGPGAGVHGGQVVSHGTPEQIAADPASVTGQYLSG
QREISIPSERRKGNGKSVKVIKAEGNNLKAVDAEFPLGKFVCVTGVSGGGKSTLTIETLF
KTASMRLNGARQTPAPCETIKGLEHLDKVIDIDQRPIGRTPRSNPATYTGAFTPIRDWFA
GLPEAKARGYKPGRFSFNVKGGRCEACQGDGLIKIEMHFLPDVYVTCETCNGARYNRETL
EITWKGKSIADVLEMTVEDAQEFFKAVPSIREKMDALARVGLGYIKVGQQATTLSGGEAQ
RVKLSKELSKRSTGRTLYILDEPTTGLHFEDVKKLLEVLHQLVETGNTVVVIEHNLDVIK
TADWLIDIGPEGGDGGGEIVAVGTPETVAEEPRSHTGHYLKEMLAARKVAAE
NT seq 2859 nt   +upstreamnt  +downstreamnt
atggccgagctcaagcatatcgaagtgcgcggtgcgcgggagcataacctgcgcagcatc
gacgtggatattccgcgcaacgagctggtggtgatcaccgggctttcgggctcgggcaag
tcatcgctggccttcgacacgatctatgccgaagggcagcggcgctatgtcgaaagcctg
tcggcctatgcgcggcagttcctcgacatgatggaaaagccggatgtggaccatatcagc
ggtctttccccggcgatctcgatcgagcagaagacgacgagcaagaacccgcgctcgacc
gttggcaccgtcaccgagatttacgactacctgcggttgctgttcgcccgggtcggcacg
ccctattcgccggcgaccggcctgcccatcgaggcgcagcaggtgcaggacatggtcgac
cgtgtgctgggcatggaggaaggcacgcgcgcctatcttctggcgcccattgtgcgtgac
cggaagggcgaatatcgcaaggaattcctggagttgcgcaagcagggcttccagcgagtg
aaggtcgacggggagtttcacgagctcgacgatccgcccaagctcgacaagaagtttcgc
cacgatatcgacgtggtggtcgaccggctggtggtgaaggacaacattggcacccggctg
gccgacagtttccgcaccgctctcgatctggctgacgggattgccgtgcttgagacctcc
ccgaaggagggggagccggagcggcataccttctccgagaattttgcctgtccggtcagt
ggtttcaccatccccgagatcgagccgcggctgttttctttcaacgcgccgttcggggcc
tgcccggaatgcggggggcttggtgccgagctgttctttgacgagcggctggtggtgccc
gatgagcaacttcgcattgccgacggggcgctggcgccgtggcggaaagggaaaagccct
tatttccttcagacgatcgaggccatcgccaagcattacgagttcgaccggaatgcgcgg
tggaaggatcttgatgcgcatgtgcagcaggtgttcctctatggctcgggcgacgaggaa
attcagttccgctatgacgagggcgggcgcgtctaccaggtgagccgggtgttcgaaggg
gtgatccccaacatggagcgccggtatcgcgaaacggatagcgcgtggatccgtgaggag
tttgagcggtatcagaataaccggccgtgtggggcctgtggcggctatcgcctgcgggac
gaggctttggcggtgaagatcgccaatctgcacattggccaggtggtcgagatgtcgatc
cgtgaggcctatgaatggtgcgagacggtgccggaaagcctgacggcgcagaagaacgag
attgccaaggccatcctgaaggaaatccgcgaacgtcttggtttccttaacaatgttggg
ctcgactacctgacgctgtcgcgcagtgcggggacgttgtcgggcggtgagagccagcgg
atcaggctggcgagccagatcgggtcggggctgaccggggtgttgtatgtgctcgacgag
ccgtcgattggcctgcaccagcgggataacgggcggctgttgcagacgctgcagaacctg
cgggaccagggcaatacggtgatcgttgtggagcatgacgaggaggcgatccgcacggcg
gattacgttttcgacatcggtccgggcgccggggtgcatggcgggcaggtggtgagccac
ggcacgccggagcagattgccgctgacccggcctctgtgaccgggcaatacttgtcaggc
cagcgggagatttccattccgtctgagcggcgcaaggggaacgggaaatccgtcaaggtt
atcaaggcggaaggaaacaatcttaaggcggtcgatgccgagtttcctctgggcaagttc
gtctgcgtgaccggggtttccggcgggggcaagtcgacgctgacgatcgagacgttgttc
aagaccgcgtcgatgcggctcaacggggcgcggcagacgccggcgccgtgcgagacgatc
aaggggctggagcacctggacaaggtgatcgatatcgaccagcgacccatcgggcggact
ccgcgttccaatccagccacgtataccggggcgttcacgccgatccgggactggtttgcc
gggctgccggaggcgaaggcgcgggggtacaagccgggaaggttctcgttcaacgtcaag
ggcgggcggtgtgaggcctgccagggcgatgggctgatcaagatcgagatgcactttctg
cccgatgtctatgtcacctgcgagacctgcaatggcgcgcggtacaaccgcgagacgctg
gaaatcacgtggaaaggcaagagcatagccgacgttcttgagatgactgtcgaggacgcg
caggagttcttcaaggcggtgccgtcgatccgggagaagatggatgcgctggcgcgtgtg
gggcttggctatatcaaggtcgggcagcaggcgacgaccttgtcgggcggcgaagcgcag
cgggtgaagctgtcgaaggagttgtcgaaacggtcgacggggcggactctctatatcctc
gacgagccgacgacgggcctgcatttcgaggacgtgaagaaactgctggaagtccttcat
cagcttgtggaaaccggcaatacggttgtcgtgatcgaacacaatcttgacgtcatcaaa
acggctgactggctgatcgatatcgggccggaaggcggtgatggcgggggcgagatcgtg
gcggtcgggacgccggaaacggtggccgaggagccgcggagccataccgggcattacctc
aaggagatgctggcggcgcggaaggtggcggccgaatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (14)   
   Pfam (14)   
All databases (21)   

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