KEGG   Roseburia intestinalis M50/1: ROI_13670
Entry
ROI_13670         CDS       T02598                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
rim  Roseburia intestinalis M50/1
Pathway
rim03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rim00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    ROI_13670
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rim03021]
    ROI_13670
   03400 DNA repair and recombination proteins [BR:rim03400]
    ROI_13670
Enzymes [BR:rim01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     ROI_13670
Transcription machinery [BR:rim03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     ROI_13670
DNA repair and recombination proteins [BR:rim03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      ROI_13670
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Apocytochr_F_C ApbA_C
Other DBs
NCBI-ProteinID: CBL08517
UniProt: D4KNR5
Position
1372588..1376259
AA seq 1223 aa
MPETMSKETTGQSISFDAIKIGLASPEKIREWSRGEVKKPETINYRTLKPEKDGLFCEKI
FGPSKDWECHCGKYKKIRYKGVVCDRCGVEITKASVRRERMGHIELAAPVSHIWYFKGIP
SRMGLILDLSPRTLEKVLYFASYIVLDAGNTALQYKQVLSESEYQEAREQYGSSFRVGMG
AEAIQELLQAIDLEKDSAELKAELEDATGQKRARIIKRLEVVEAFRESGNKPEWMIMTVI
PVIPPDLRPMVQLDGGRFATSDLNDLYRRIINRNNRLRRLLELGAPDIIVRNEKRMLQEA
VDALIDNGRRGRPVTGPGNRALKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVICVEPKLK
IYQCGLPKEMAIELFKPFVMKELVANGTAHNIKSAKKMVERLQTEVWDVLEDVIKEHPVM
LNRAPTLHRLGIQAFEPILVEGKAIKLHPLVCTAFNADFDGDQMAVHLPLSVEAQAECRF
MLLSPNNLLKPSDGGLVAVPSQDMVLGIYYLTQERPGAKGEGKFFKSVNEAILAYENGVV
TLHSRITVRMTKTMPDGTTLTGNVESTLGRFIFNEIIPQDLGFVDRSIPGNELKLEVDFL
VAKKQNKQILEKVINIHGATKTAEVLDAVKAMGYKYSTRAAMTVSISDMTVPPQKPQMIK
DAQDTVDRIMKQYKRGLITEEERYKEVVETWKETDEELTHALLSGLDKYNNIFMMADSGA
RGSDKQIKQLAGMRGLMADTTGRTIELPIKSNFREGLDVLEYFMSAHGARKGLSDTALRT
ADSGYLTRRLVDVSQHMIVRESDCCEGTGREIPGMWVTAFMDGKEEIESLQERITGRFSC
NTICDKDGNVIVKANHMITPKRAAAVMSQGVDENGEPLKKVKIRTVLSCRSHMGVCAKCY
GANMATGQAVQVGEAIGIIAAQSIGEPGTQLTMRTFHTGGVAGNDITQGLPRVEEIFEAR
KPKGLAIITEFGGVATIKDTKKKREIIVTNNETGESKAYLIPYGSRIKVMDGAVLEAGDE
LTEGSVNPHDILKIKGVRAVQDYMLREVQRVYRLQGVEINDKHIEVIVRQMLQKVRVETN
GDSEMLPGVLVDALDFEDTNEKLVEEGKEPAEGKQVLLGITKASLATNSFLSAASFQETT
KVLTEAAIKGKVDPLIGMKENVIIGKLIPAGTGMKRYRNIKLDSDINEDDELMFDDFDDF
DDYEEEIPRDEENEIEEAPVEEE
NT seq 3672 nt   +upstreamnt  +downstreamnt
atgccagaaacaatgagtaaagaaaccacaggtcagtctatctcatttgatgccattaaa
attggattggcgtctccggaaaagatccgggaatggtccagaggcgaggtaaagaaaccg
gagaccattaactatagaactttaaaaccggaaaaagatggtctgttctgtgaaaagata
tttggaccgagcaaagactgggaatgtcattgtggtaaatataagaaaatccgttacaaa
ggcgttgtctgcgaccgatgcggcgttgagattacaaaagcaagcgttcgtagagagcgt
atgggacacattgagcttgctgctccggtatcccatatctggtactttaagggtattccg
tcacgtatgggattaatccttgacttatccccaagaactcttgaaaaagttctttacttt
gcttcttatatcgtactggatgcgggcaacaccgcattgcagtacaaacaggtactttcc
gagagcgaataccaggaagcaagagagcagtacggcagttctttccgtgttggaatgggt
gctgaggctattcaggaattattacaggcaatcgatctggagaaagattccgcagaatta
aaggcagagcttgaggatgcaaccggccagaaacgtgcaagaatcatcaagagactggaa
gttgtagaggctttccgtgagtccggcaacaaaccggagtggatgatcatgacagtgatc
ccggttatcccgccagatttacgtcctatggttcagctggatggtggacgttttgcaaca
tccgatctgaatgatttatacagacgtatcatcaaccgtaacaatcgtttaagaagactc
ttagagttaggagcaccggatatcatcgtccgcaacgagaaacgtatgcttcaggaagct
gttgatgccctgatcgataatggtcgtcgtggccgtcctgttacaggtcctggtaaccgt
gcattaaaatctctttcagatatgttaaaaggtaaatccggacgtttccgtcagaactta
cttggaaaacgtgttgactactccggacgttccgttatctgtgtagagccgaagttaaag
atttatcagtgcggtctgccaaaagagatggcaattgagctgttcaaaccgttcgtaatg
aaagagcttgttgcaaacggaactgcacacaatatcaagagtgcgaaaaagatggttgag
agactccagacagaggtttgggatgttctcgaagacgttatcaaagagcatccggttatg
ttaaaccgtgctcctacactgcatcgtcttggtattcaggcattcgagccgatcctcgta
gaaggtaaggcaattaagttacatccattggtatgtaccgcgttcaacgccgacttcgat
ggtgaccagatggctgtgcatcttccactttctgtagaagcacaggcagagtgccgtttt
atgttactttcaccgaataacctgttaaaaccgtctgatggtggtcttgttgccgttcct
tcacaggatatggtacttggtatctactatctgacacaggagagaccgggagcaaaagga
gaaggtaaattcttcaagagtgtaaacgaagcaattcttgcatacgagaatggtgtagta
acacttcactcaagaatcactgtccgcatgacaaagaccatgccggatggaacaacactt
accggaaatgtagaatctacactgggacgcttcatttttaatgagatcattccacaggat
cttggatttgtagacagaagcattccgggcaatgaattaaaactggaagtagatttcctc
gttgcaaagaaacagaataaacagattctggaaaaagtaatcaatatccatggtgcaaca
aagacagcagaagttcttgatgccgtaaaagctatgggttacaaatattccacaagagca
gctatgaccgtatccatttccgatatgaccgtaccgcctcagaaaccgcagatgatcaaa
gatgcacaggatactgttgaccgtatcatgaaacagtataaacgtggtcttatcactgag
gaagagcgttacaaagaggttgttgaaacctggaaagagaccgatgaggaactgacacat
gcacttctttccggacttgataaatacaacaacatcttcatgatggctgactccggagcc
cgtggttccgataaacagatcaaacagcttgccggtatgcgtggacttatggcagataca
accggtcgtacgatcgagctgccgatcaagtcaaacttccgtgaaggtcttgacgtactt
gaatacttcatgtccgcacatggtgcccgtaaaggtctttccgataccgcacttcgtacg
gctgactccggttacctgaccagacgtcttgttgatgtttcacagcacatgatcgttcgt
gagtctgactgctgtgagggtacaggcagagagattccgggaatgtgggtaactgcattc
atggatggaaaagaagagatcgagagtcttcaggagcgtatcacaggacgtttctcctgc
aatacgatctgtgacaaagatggaaatgtcattgtaaaagcaaaccatatgatcacaccg
aagcgtgcagctgcagttatgagccagggtgttgatgagaatggcgagccgcttaagaaa
gttaagatccgtaccgtattatcctgccgctcccatatgggtgtctgtgcaaaatgttac
ggtgcaaacatggctaccggccaggctgtacaggttggtgaggcaatcggtattatcgca
gcacagtctatcggtgagcctggtacacagcttaccatgcgtacgttccataccggtggt
gttgccggaaacgatattacacagggtcttcctcgtgtcgaggagatttttgaggcaaga
aagcctaagggtcttgctatcatcacagagtttggcggcgtagcaacgattaaggatacc
aagaagaaacgtgagatcatcgttaccaataatgagaccggagaatcaaaggcatatctg
atcccttatggttccagaattaaggttatggatggcgcagtacttgaagccggtgatgag
ctgacagaaggttctgtaaatccacacgatatcttaaagatcaaaggtgtccgtgcagtt
caggattacatgctccgcgaggtacagcgtgtataccgtctgcagggtgtagaaatcaac
gataagcatatcgaggttattgtgcgtcagatgttacagaaagtacgcgttgagacaaac
ggtgattcagagatgcttccgggtgtattggtagatgcacttgatttcgaagataccaat
gagaaactggtagaagaaggaaaagagccggcagagggcaaacaggtattacttggtatt
accaaggcttcccttgcaacgaactccttcttatcagcagcatccttccaggagacaaca
aaagttcttacggaagctgcaatcaaaggtaaagtcgatccattgatcggtatgaaagag
aatgttatcatcggtaaactgattcctgcaggaacaggtatgaagagataccgcaacatt
aaactggattctgatatcaatgaggatgacgagctgatgtttgatgattttgatgacttc
gacgattatgaggaagagattccgagggacgaagaaaatgaaatcgaagaagctccggta
gaggaagaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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