KEGG   Rhizobium jaguaris: CCGE525_08650
Entry
CCGE525_08650     CDS       T05891                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
rjg  Rhizobium jaguaris
Pathway
rjg03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rjg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CCGE525_08650 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rjg03021]
    CCGE525_08650 (rpoC)
   03400 DNA repair and recombination proteins [BR:rjg03400]
    CCGE525_08650 (rpoC)
Enzymes [BR:rjg01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CCGE525_08650 (rpoC)
Transcription machinery [BR:rjg03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CCGE525_08650 (rpoC)
DNA repair and recombination proteins [BR:rjg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CCGE525_08650 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 RPOC_hybrid RnfC_N
Other DBs
NCBI-ProteinID: AYG58860
UniProt: A0A387FHT2
Position
1769947..1774158
AA seq 1403 aa
MNQEVMNLFNPQVPAQNFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRISTLLDMTLKDVERVLYFENYIVTEPGLTALKEHQLLTEEEYMLAVDEYGEDQFTA
MIGAEAIYEMLASMNLEKIAGDLRSELADTTSDLKQKKLMKRLKIVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSILNQNEPGEGMAFSDLGELHHALE
NKVVTLHSKIRGRFKSIDEDGKPYSKIYETTPGRLLIGELLPKHGKVTFDICNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFAHACRAGISFGKDDMVIPSTKAKIVGDTEAL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARIKAVEFDEKTGRQKPMNSIY
MMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVTHVDCGTETGLTMTAIVDAGQVVASLGARILGRT
ALDDIDHPVTGERIVDAGKMILEPDVVEIEKAGIQSIRIRSALTCEIQTGVCSVCYGRDL
ARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHLGGTATVVDQSFLEASYEGTVQIRNRN
MLRNSEGNLVAMGRNMTVQILDERGVERSSQRVAYGSKLYVDDGDKVKRGQRLAEWDPYT
RPMMTEVAGTVHFEDVVDGLSVLEATDESTGITKRQVIDWRSTPRGSDLKPAIVVKDASG
NVAKLSRGGEARFLLSVDAILSVEPGQKVSQGDVLARSPLESAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGTIRLGRDYKNKRRVIIEPAEDGVEPVEYLIPKGKPFHLQEGDYIE
KGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVE
ITDAGDSQYIVGDNVDRIELEDANDRLIEEGKKPAYGDPVLLGITKASLQTPSFISAASF
QETTKVLTEAAIAGKTDGLQGLKENVIVGRLIPAGTGGTMTQIRRIATARDELILEERRK
GTGAAVATPMLQDMADENAPAAE
NT seq 4212 nt   +upstreamnt  +downstreamnt
atgaaccaagaggtcatgaatcttttcaatccgcaggtgcctgcacagaatttcgattcc
atccggatttcgatcgcatcgccggagaagattctttcctggtcttatggtgagatcaag
aagccggagacgatcaactatcgtacgttcaagccggaacgcgatggtctcttctgcgcg
cgaatcttcgggccgatcaaggattacgagtgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgcggcgtcgaagtcacgctgtcgcgcgttcgccgt
gagcgcatgggccatatcgagctcgccgctcccgttgcccatatctggttcctgaagtcg
ctgccgagccgtatttccacgcttctcgacatgacgctgaaggatgtcgagcgggttctc
tacttcgaaaactacatcgtcaccgagccgggcctgaccgcgcttaaggagcaccagctc
ctgacggaagaagagtacatgctcgccgtcgacgaatatggcgaagaccagttcaccgcc
atgatcggcgctgaagcgatctacgagatgctggccagcatgaacctcgagaagatcgcc
ggcgatctgcgctccgagcttgccgataccacgtcggatctcaagcagaagaagctgatg
aagcgcctgaagatcgtcgagaacttcatggagtccggcaaccgtccggaatggatgatc
atgaaggtcgtcccggtcatcccgccggacctgcgtccgctggtgccgctcgacggcggc
cgtttcgcgacgtcggatctgaacgatctgtaccgccgcgtcatcaaccgtaacaaccgt
ctgaagcgcctcatcgaactgcgcgctccgggcatcatcatccgcaacgaaaagcgcatg
ctgcaggaatctgtcgatgcgctgttcgacaacggccgtcgcggccgcgtcatcacgggc
gccaacaagcgtccgctgaagtcgctgtccgacatgctcaagggcaagcagggccgcttc
cgtcagaacctgctcggcaagcgcgtcgactattccggccgttcggtcatcgtgaccggt
ccggagctgaagctgcatcagtgcggcttgccgaagaagatggcgctcgaactgttcaag
ccgttcatctacgcccgcctcgacgccaagggttattcctcgaccgtcaagcaggccaag
aagctggttgaaaaggaaaagccggaagtttgggatatcctcgacgaggtcatccgcgag
catccggttctgctgaaccgcgcgccgacgctgcaccgcctgggtatccaggccttcgaa
cccatgctggtcgaaggcaaggccattcagttgcacccgctcgtctgcacggccttcaac
gccgacttcgacggtgaccagatggccgttcacgtgccgctgtcgctcgaagcccagctt
gaagcccgcgtgctgatgatgtcgaccaacaacatcctgcatccggcaaacggcgcaccg
atcatcgttccgtcgcaggacatggttctcggtctctattacctctcgatcctgaaccag
aacgagccgggcgaaggcatggccttctccgatctcggcgagctgcatcacgctctggaa
aacaaggtcgtgacgctgcactcgaagatccgcggccgcttcaagtcgatcgacgaagat
ggcaagccctattcgaagatctatgaaacgacccctggccgcctgctgatcggcgaactg
ctgccgaagcacggcaaggtgaccttcgacatctgcaaccaggaaatgaccaagaagaac
atctccaagatgatcgacacggtctaccgtcattgcggtcagaaggacacggtcatcttc
tgcgaccgcatcatgcagctcggcttcgcccatgcctgccgcgccggcatttcgttcggc
aaggacgacatggtcatcccgagcaccaaggccaagatcgtcggcgataccgaagcgctc
gtgaaggaatatgagcagcagtacaatgacggtctgatcacccagggcgaaaagtacaac
aaggttgtcgacgcttggggcaaggctacggaaaaggtcgccgaagaaatgatggcccgc
attaaggccgtcgaattcgacgagaagaccggtcgtcagaagccgatgaactcgatctac
atgatgagccactcgggcgctcgtggttctccgaaccagatgcgtcagcttggcggcatg
cgcggcctcatggccaagccgtcgggcgaaatcatcgagacgccgatcatctcgaacttc
aaggaaggcctgaccgtgaacgagtacttcaactcgacgcacggcgcccgtaagggtctg
gcagacaccgccttgaagaccgcgaactcgggctacctgacccgccgtctcgtcgacgtc
gcgcaggattgcatcgtgacgcacgtcgattgcggcaccgaaaccggccttaccatgact
gccatcgtcgatgccggtcaggttgtggcctcgctcggcgcccgcatcctcggccgtacg
gcgctggacgatatcgaccatccggtcacgggtgagcgcatcgtcgacgccggcaagatg
atccttgagccggatgtcgtcgagatcgaaaaggctggtatccagtcgatccgtatccgt
tcggctctgacctgcgaaatccagacgggcgtctgctcggtctgctacggccgcgacctt
gctcgcggtacgccggtcaacatcggtgaagctgtcggcgtcatcgccgctcagtcgatc
ggtgagccgggcacgcagttgaccatgcgtaccttccacctgggcggcacggcgaccgtg
gtcgaccagtcgttcctggaagcctcgtatgagggaacggtgcagatcaggaaccgcaac
atgttgcgcaactccgaaggcaacctggttgccatgggccgcaacatgacggtgcagatc
ctggacgaacgtggcgtcgaacgctcttcgcagcgcgtcgcttacggctccaagctctat
gtcgacgacggcgacaaggtgaagcgcggccagcgtctcgcagaatgggatccgtatacc
cgtccgatgatgacggaagtggccggtacggtacacttcgaagacgtcgtcgacggtctc
tcggttctcgaagcgaccgacgagtcgaccggcatcaccaagcgtcaggttatagactgg
cgctcgaccccgcgcggttcggatctgaagccggcgatcgtcgtcaaggacgccagcggc
aatgttgccaagctgtcgcgtggcggtgaagctcgcttcctgctttcggtcgacgcgatc
ctgtccgtcgagccgggccagaaggtgtcgcagggcgacgttcttgcccgttcgccgctg
gaaagcgccaagaccaaggacatcaccggtggtctgccgcgcgttgccgaactgttcgaa
gcccgtcgtccgaaagaccacgccatcatcgctgagatcgatggtacgatccgcctcggc
cgcgactacaagaacaagcgccgtgtcatcatcgagccggcggaagacggtgtcgagccg
gtcgaatacctgatcccgaagggcaagcccttccaccttcaggaaggcgattatatcgaa
aagggtgactacatcctcgacggtaacccggctccgcacgacatcctggcgatcaagggc
gtggaggctctggcttcctacctcgtcaacgaaatccaggaagtctaccgcttgcagggc
gttgtcatcaacgacaagcacatcgaagtgattgtccgtcagatgctgcagaaggtggaa
atcaccgatgcaggcgacagccagtacatcgtcggcgacaatgtcgaccgtatcgaactg
gaagacgccaatgaccgcctgatcgaagaaggcaagaaacccgcttacggcgatccggtt
ctgctcggcatcaccaaggcgtcgctgcagaccccgtccttcatctccgccgcctccttc
caggaaacgacgaaggtgctgacggaagctgcgatcgccggcaagaccgacggtctgcag
ggcctgaaggaaaacgtcatcgtcggccgtctcatcccggccggtaccggcggtaccatg
acgcagatccgccgcatcgcgacggctcgcgacgagctgatcctggaagagcgccgcaag
ggcacgggtgccgccgtcgccacgccgatgctgcaggatatggctgacgagaacgctccg
gccgctgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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