KEGG   Rhizobium johnstonii: RL2801
Entry
RL2801            CDS       T00402                                 
Symbol
ddlA
Name
(GenBank) putative D-alanine--D-alanine ligase A
  KO
K01921  D-alanine-D-alanine ligase [EC:6.3.2.4]
Organism
rle  Rhizobium johnstonii
Pathway
rle00470  D-Amino acid metabolism
rle00550  Peptidoglycan biosynthesis
rle01100  Metabolic pathways
rle01502  Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:rle00001]
 09100 Metabolism
  09106 Metabolism of other amino acids
   00470 D-Amino acid metabolism
    RL2801 (ddlA)
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    RL2801 (ddlA)
 09160 Human Diseases
  09175 Drug resistance: antimicrobial
   01502 Vancomycin resistance
    RL2801 (ddlA)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:rle01011]
    RL2801 (ddlA)
Enzymes [BR:rle01000]
 6. Ligases
  6.3  Forming carbon-nitrogen bonds
   6.3.2  Acid-D-amino-acid ligases (peptide synthases)
    6.3.2.4  D-alanine---D-alanine ligase
     RL2801 (ddlA)
Peptidoglycan biosynthesis and degradation proteins [BR:rle01011]
 Precursor biosynthesis
  Amino acid ligase
   RL2801 (ddlA)
SSDB
Motif
Pfam: Dala_Dala_lig_C Dala_Dala_lig_N CPSase_L_D2 ATP-grasp ATP-grasp_3 ATP-grasp_4 RimK DUF6471
Other DBs
NCBI-ProteinID: CAK08291
RhizoBase: RL2801
UniProt: Q1MFI3
Position
2963872..2964948
AA seq 358 aa
MTPSPNRLRIAVLFGGRSAEHDVSVLSATNVMGALKPEKYDAVPVFITREGQWLLSSFED
GILATPSSGTEICLVPGGRGRMLAIPAHGAPHDLAKVDILFPVLHGQYGEDGSVQGAAEV
ARVPLAGCGILGSAAALDKDIAKRLLRAAGLPVARAVTIHEGAVPSLAALEGELGLPLFI
KPARQGSSVGVAKVHASQEVAPALAEAFRHDRTLLAEEFVRGREIEFSVLEDAAGELFVS
RPGEIVPAESHGFYSYDAKYIDEKGAALKVPAELPQEVETAMRDVAAKAFRAVGCDGMAR
IDFFLTDDMQFLVNEINTIPGFTDISMYSKAMAASGVTYAEIIDRLVDHGMARARRAD
NT seq 1077 nt   +upstreamnt  +downstreamnt
atgaccccatccccaaacaggctgcgcattgccgtgctcttcggcggccgctcggccgag
cacgacgtttccgtgctctcggcaaccaatgtcatgggcgcgctcaaacccgaaaaatac
gacgccgtccctgttttcatcacccgcgaggggcaatggctgctgagcagtttcgaggac
ggtatactggcgacgccatcatcaggcacggaaatctgcctcgtgccgggcggacggggc
cggatgctggcgatcccagctcatggcgcgccgcatgacctagcaaaggtcgacattctg
tttcctgtcctccacggccagtatggcgaggacggatcagtgcagggcgctgcggaggtg
gcccgcgttccactcgccggttgcggcatcctcggctccgccgctgcgctcgacaaggac
atcgccaaacgcctgctgagggcggcgggcctgccggtggcgcgcgcggtgacgatccat
gagggtgccgtcccttcactggcagccttggaaggtgagctcggcctgccgctcttcatc
aagcctgcgcgccagggatcgtcggtcggtgtcgccaaggtccatgccagccaggaagtc
gcgcctgcccttgctgaggccttccgccacgaccgcacactgctcgccgaggaattcgtg
cgcggccgtgagatcgaattcagcgtgctggaggatgcggcaggagaactcttcgtctcc
cggccgggcgagatcgtgccggcggaaagccacggtttctatagctacgatgccaaatat
atcgacgagaaaggtgcggcgctgaaagtgccggccgaactgccgcaggaggtcgagacc
gccatgcgcgacgtcgccgcaaaagccttcagggccgtcggctgcgatggcatggcccgc
atcgacttcttcctgacggatgacatgcaattcctcgtcaatgaaatcaacaccatcccc
ggcttcaccgatatcagcatgtattccaaggcgatggcggcaagcggcgttacctacgcc
gaaatcatcgaccgtctggtggaccacggcatggcgcgcgcccgacgggccgactga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
   RHIZOBASE (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (28)   

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