KEGG   Rhizobium johnstonii: RL3703
Entry
RL3703            CDS       T00402                                 
Symbol
rpoZ
Name
(GenBank) putative ECF sigma factor
  KO
K03088  RNA polymerase sigma-70 factor, ECF subfamily
Organism
rle  Rhizobium johnstonii
Brite
KEGG Orthology (KO) [BR:rle00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rle03021]
    RL3703 (rpoZ)
Transcription machinery [BR:rle03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     RL3703 (rpoZ)
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 Sigma70_ECF HTH_23 HTH_28 DUF134 TraL_transposon CSTF_C GerE HSV_VP16_C
Other DBs
NCBI-ProteinID: CAK09192
RhizoBase: RL3703
UniProt: Q1MCY8
Position
complement(3898747..3899304)
AA seq 185 aa
MEDKSQPSFKRELLAALPSLRAFAISLIGRHDRADDLVQDTIMKAWAKQDHFEMGTNMKA
WLFTILRNELYSQMRKSGREVQDSDGLFTESMAMHPSQYGALDLQDFKKALDQLPPDQRE
AIILVGASGFSYEEAAEICGCAVGTIKSRVNRARQRLQELLQISGEADFGPDATSAPLTS
KAFAF
NT seq 558 nt   +upstreamnt  +downstreamnt
atggaagacaaatcgcaacccagcttcaagcgggaactgctggcggcactcccaagcctt
cgcgctttcgcaatctcgctcatcgggcggcacgaccgtgccgacgatctcgtccaggac
accatcatgaaagcctgggccaagcaggatcatttcgagatgggcaccaatatgaaggcc
tggctctttacgatcctgcgcaacgaactctacagccagatgcgcaagagcggccgcgaa
gtgcaggacagcgacgggctgttcaccgaatctatggcgatgcacccctcgcaatatggc
gcgctcgatctgcaggacttcaagaaggcgctcgaccagctgccgccggatcaacgcgag
gcgatcatcctcgtcggcgcctcgggtttttcctatgaggaggcggccgaaatctgtggc
tgcgccgtgggcaccatcaagagccgcgtcaaccgagctcgccagcggctgcaggagttg
ctgcagatctcaggcgaggctgatttcggccccgacgccacctcggcgccgctgacatcg
aaggctttcgcgttctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
   RHIZOBASE (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (19)   

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