KEGG   Rhizobium johnstonii: pRL90293
Entry
pRL90293          CDS       T00402                                 
Name
(GenBank) putative urea amidolyase
  KO
K01941  urea carboxylase [EC:6.3.4.6]
Organism
rle  Rhizobium johnstonii
Pathway
rle00220  Arginine biosynthesis
rle00791  Atrazine degradation
rle01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:rle00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00220 Arginine biosynthesis
    pRL90293
  09111 Xenobiotics biodegradation and metabolism
   00791 Atrazine degradation
    pRL90293
Enzymes [BR:rle01000]
 6. Ligases
  6.3  Forming carbon-nitrogen bonds
   6.3.4  Other carbon-nitrogen ligases
    6.3.4.6  urea carboxylase
     pRL90293
SSDB
Motif
Pfam: CT_A_B CPSase_L_D2 Biotin_carb_N CT_C_D Biotin_carb_C Biotin_lipoyl Dala_Dala_lig_C Biotin_lipoyl_2 ATP-grasp_5 ATP-grasp HlyD_3 RimK NQRA GCV_H
Other DBs
NCBI-ProteinID: CAK04022
RhizoBase: pRL90293
UniProt: Q1M8E9
Position
pRL9:316967..320506
AA seq 1179 aa
MFTKVLIANRGEIAVRVIRTLKRMGIASVAVYSDADRFSMPALTADEAMRLGPAPAAESY
LNVDAVIAACKATGAQAVHPGYGFLSENIGFAERLAAEGIAFIGPRPEHLSAFGLKHTAR
ELAKASGVPLLPGTDLLQSVEEALSAAETVGYPVMLKSTAGGGGIGMQLCADAAGLTASF
ESVQRTARASFGDARVYIERFVAEARHVEVQIFGDGKGGVIALGERDCSLQRRNQKVVEE
TPAPGLSAETRARLHKAAVDLGRSVSYESAGTVEFIYDPQREEFYFLEVNTRLQVEHPVT
EAVFGIDLVEWMIRQAAGEDVLSGANALTPKGAAIEVRIYAEMPHADFRPSAGLLTEVVF
PDNARVDGWIETGTEVTPFYDPMLAKLIVTAEDRPAAIEKLKAALAATSISGIETNLDYL
RVIAASELLAGAKVATTALRDFAFVPDVVEVLAPGAQSSIQELPGRLGLWHVGVPPSGPM
DERSFRHANRLVGNADVTAALELTVSGPTLRFYADQTIALAGARMAMTCDGIKLPHDAPV
LIRAGQILSIGTIDGPGQRAYLAVAGGFAAPVVLGSRATFGLGQFGGNATGTLKTGHVLH
FARQAPAEPARPATEPAALTREWDVGVVYGPHGAPDFFVDSDIETLFSTAYEVHFNSART
GVRLIGPAPVWARHDGGEAGLHPSNLHDNAYAIGAIDFTGDMPIILGPDGPSLGGFVCPA
VIARDEQWKMGQFKPGDRIRFHAVVRAEDPIAGPAVRRVAEETGSPIVGTSEDGPVSVVY
RRQGDDNLLVEYGPMTLDIALRLRVHLLMQAVIEARLPGIVDLTPGIRSLQIHYDGTQLT
RRRLLGLLCEIEATLPAAQEVTVPSRIVHLPLSWNDPDAELAMRKYQELVRPNAPWCPSN
IEFIRRINGLPDEQAVRDIVFDASYLVLGLGDVYLGAPVATPTDPRHRLVTTKYNPARTW
TPENAVGIGGAYMCIYGMEGPGGYQLFGRTIQVWNTWRETPAFAKGKPWLLNFFDQIRFF
PVSNQELTEARAAFPHGGYPIRIEETEFSYAAYEKELQANSASIGRFKATQQAAFDTERQ
RWKEAGLDSFVTDEGTGESPDWDIPDGCFGVASAVPGNIWKLLVEPGASVAAGDTLAIIE
SMKMEINVTAHAAGRVRDLRAGPGRNVKAGDIIVVLEEC
NT seq 3540 nt   +upstreamnt  +downstreamnt
atgttcaccaaggtccttatcgccaatcgcggcgaaatcgccgtccgggttatccggaca
ttgaagaggatgggcatcgcctcggtcgccgtctattccgatgccgaccggttctcgatg
ccggcgctgaccgccgacgaggcaatgcgcctcggaccggcgccagccgctgagagctat
ctcaacgtcgatgccgtcatcgccgcctgcaaggcgacgggagcacaggccgtgcatccg
ggctatggctttctctcagagaatatcggctttgccgagcggctcgccgccgaaggtatc
gctttcatcggcccgcggccggagcatctgtcggccttcggcctgaagcacacggcgcgc
gaactggcaaaggcgagcggcgtgccgctgctgcccggcaccgatctcttgcagagcgtc
gaagaggcgctttcggccgcagaaaccgtcggctatcccgtcatgctgaagagcacggcc
ggcggcggcggcatcggcatgcagctctgcgccgatgcagcgggcctcacggcctctttc
gaaagcgtgcaacggaccgcgcgggccagcttcggcgatgcgcgcgtctacatcgagcgt
ttcgttgccgaagcgcgccatgtcgaggtgcagatcttcggcgacggcaagggcggcgtc
atcgcgctcggcgaacgcgactgctcgctgcagcgccgaaaccagaaggtggtcgaggaa
acccctgctcccggcctttctgccgaaacgagggcgcggctgcacaaggcggcggtcgat
ctgggacgctcggtctcctatgaatcggccggcaccgtcgaattcatctatgatcctcag
cgcgaggaattctatttcctcgaggtcaatacccggctgcaggtcgagcatccggtgacg
gaagccgtcttcggcatcgatctcgtcgaatggatgatccggcaggcggcgggcgaggac
gtgctttcgggtgcgaatgccctgacgccgaagggtgcggcgatcgaggtgcggatctat
gccgagatgccgcacgccgatttccgcccgagcgccggcctgctgaccgaggtcgtcttc
ccggacaatgcccgcgtcgacggctggatcgagacgggaaccgaggtgacgccgttctac
gacccgatgcttgccaagctgattgtgacggcggaagaccggccggcggcgatcgagaag
ctgaaggcagcgcttgcggcgacatcgatatcgggcatcgagaccaatctcgattatctc
agggtgatcgccgcttccgaactgcttgccggcgccaaggtggcgacgacggcgctccgc
gatttcgccttcgttcccgatgtcgtcgaggtgcttgcgccgggtgcccaatcgagcatt
caggaacttccgggccggctcggcctctggcatgtcggcgtgccgccgagtggtccgatg
gacgagcgctccttccgccatgccaaccggctggtcggcaatgccgacgtgacggctgca
ctcgaattgacggtttccggcccgacattgcggttttatgccgaccagacgatcgcgctt
gccggcgcccggatggcgatgacatgtgacggcataaagttgccgcacgatgcgccagta
ctgatccgcgccggtcagattctatcgatcggcaccatcgatggaccggggcagcgcgcc
tatcttgctgtcgcgggcggttttgccgcacccgttgtgctcggttcgcgcgcgaccttc
ggcctcggccagttcggcggtaacgccaccggcacgctgaagacagggcacgtgttgcat
tttgcccggcaggcgccagccgaaccggccagaccggcaacggagccggccgccttgacg
cgcgaatgggatgtcggcgtggtctacggcccgcacggcgcgccagatttcttcgtggac
agcgatatcgagacgctgttctcgacggcctacgaagtgcatttcaacagcgcccgcacc
ggcgttcgcctcatcggcccggccccggtttgggcgcgccacgatggcggcgaggcgggg
ctgcacccctccaacctgcacgacaatgcctatgcgatcggggcgatcgatttcaccggc
gacatgccgatcattctcggtcctgacggtccgagccttggcggcttcgtctgcccggcg
gtgattgcccgcgacgagcagtggaagatgggccagttcaagcccggcgaccgcatccgt
tttcatgcagtcgtgcgggcggaagacccgatcgctggtccagcggtacggcgggtcgcg
gaagagacgggttcgccgatcgtcggcaccagcgaggacggaccggtttcggtcgtctat
cgccgccagggcgacgacaacctgctcgtcgaatacgggccgatgacgcttgatatcgcg
cttcggctgcgggtgcatctgctgatgcaggcggtcatcgaggctcgccttcccggcatc
gtcgaccttacccccggcatccgttccctgcagatccattatgacggcacgcagctgaca
cgccggcgcctgctggggctgctctgcgagatcgaggcgacgcttccggcagcccaggag
gtcacggtgccgagccgcatcgtgcacctgccgctttcctggaacgatccggatgcggag
cttgcgatgcgcaaatatcaggagctggtgcgcccgaatgcgccctggtgcccgtcgaat
atcgagttcatccgccgcatcaacggtcttcccgacgaacaggccgtccgcgatatcgtc
tttgatgccagctacctggtgctgggactcggcgatgtctatctcggcgcgcccgttgcg
accccgaccgatccgcgccaccgtctcgtgacgacgaaatacaatcccgcccgcacctgg
accccggaaaatgccgtcggcatcggcggcgcctatatgtgcatctatggcatggaagga
ccgggcggctaccagctctttggccgtactattcaggtctggaacacttggcgggagacg
ccggcctttgccaagggaaaaccttggctgctgaacttcttcgaccagatccgtttcttc
ccggtcagcaatcaggagctgacggaggcgcgcgccgccttcccacacgggggctatccg
atcaggatcgaggagacggaattctcctatgccgcttacgagaaggaattgcaggcgaat
tcggcgtcgatcggccgtttcaaggcaacgcagcaggccgccttcgatactgagcgccag
cgctggaaggaagccgggctcgacagcttcgtcaccgatgaaggcacgggcgaaagtccg
gattgggatattcccgacggctgcttcggtgttgccagcgccgtgcccggcaatatctgg
aaattgctggtcgagccgggtgcctcggttgcggccggcgatacactcgccatcatcgaa
tcgatgaaaatggaaatcaacgtcaccgcccatgcggcaggccgcgtccgcgacctgcgc
gccgggccgggaagaaacgtcaaagccggcgatatcatcgtcgttctggaggaatgctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
   RHIZOBASE (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (14)   
   Pfam (14)   
All databases (33)   

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