KEGG   Rhizobium leguminosarum bv. trifolii WSM2304: Rleg2_2396
Entry
Rleg2_2396        CDS       T00779                                 
Name
(GenBank) DNA polymerase LigD, ligase domain protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rlt  Rhizobium leguminosarum bv. trifolii WSM2304
Pathway
rlt03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rlt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Rleg2_2396
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rlt03400]
    Rleg2_2396
Enzymes [BR:rlt01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Rleg2_2396
DNA repair and recombination proteins [BR:rlt03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Rleg2_2396
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: ACI55671
UniProt: B5ZUW2
Position
complement(2455496..2456545)
AA seq 349 aa
MTKPPRKPSQPLLGNVDAPIRSRPRRRRDPAQPNLPLDPMPARIEPCLALLKPKPPKGAQ
WSFEVKWDGYRIAVHIAPSGVHILTRGGHDWTHRFPAIAAEAAQLGAATAILDGEAVVLD
DQGRSDFGKLQQSLGGRGGKLNSGASVLMAFDLLYFDGHDLTKTELSTRRHLLEGLIAPG
RESSIRLSEDVDADGEQLLRVACEHGLEGIIAKDRNSPYRSGRGGDWLKIKCIQSDGFAI
IGYENSTAAFGGIGRLLLAARKGDELVYVGGVGTGFNERSAAELREQMDKLIIPQPAVNT
GRKRNAVFIEPKLVAEIEYRGSTNDGKLRHASYKGLREKQDNAAVYEIA
NT seq 1050 nt   +upstreamnt  +downstreamnt
atgacgaagccgcctcgtaaaccctcacagccgctgctcggtaacgttgacgcacccatc
cgcagccggccgcgccggcggcgcgatccagcccagccgaaccttcccctcgatccaatg
cctgcccgcatcgagccttgtctagcgctcctcaagccgaagccgccgaaaggcgcgcaa
tggtcgtttgaggtgaaatgggatggctatcgcattgccgttcacatcgcaccatctggc
gttcacatcctgacacgtggcggtcatgactggacgcaccgcttcccggcgatcgcggcc
gaagcagcgcagctcggcgcggcgacggcaatcctcgatggcgaagctgtggtgctggat
gaccagggccgctcggatttcggcaagctgcagcagtcgctcggcggccggggcgggaag
ctgaattccggcgcatcggtcctaatggctttcgatcttctatatttcgacggccacgat
ctgacgaagacggagctttcgacgcgacggcacttgctcgaggggctgatcgcaccaggc
cgggaaagttcgatacggctctcggaagacgtcgacgccgatggcgagcagctgctgcgt
gtcgcttgcgagcacgggctcgaaggtatcatcgcgaaagaccgcaacagcccgtatcgc
agcggccgcggcggcgattggctcaagatcaaatgcatccagagcgatggcttcgcgatc
atcggctacgagaattcgacggcagctttcggcggcatcggccggctgctgcttgccgcg
cgcaaaggagatgagctcgtctatgttggtggagtggggacggggttcaacgagcgttcc
gcggccgagctccgagagcagatggacaagctgatcataccccagccggccgtcaacacc
ggacgcaagcgcaacgcggtctttatcgaaccgaagcttgtcgccgagatcgaatatcga
ggatcgaccaacgacgggaagctcaggcacgcctcatataaggggctgagggagaagcag
gacaacgcggcggtttatgagattgcttaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (20)   

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