KEGG   Candidatus Ruthia magnifica (Calyptogena magnifica): Rmag_0436
Entry
Rmag_0436         CDS       T00438                                 
Name
(GenBank) ribonuclease, Rne/Rng family
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
rma  Candidatus Ruthia magnifica (Calyptogena magnifica)
Pathway
rma03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rma00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Rmag_0436
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rma03019]
    Rmag_0436
   03009 Ribosome biogenesis [BR:rma03009]
    Rmag_0436
Enzymes [BR:rma01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     Rmag_0436
Messenger RNA biogenesis [BR:rma03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Rmag_0436
Ribosome biogenesis [BR:rma03009]
 Prokaryotic type
  rRNA processing factors
   Rmag_0436
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1
Other DBs
NCBI-ProteinID: ABL02195
UniProt: A1AW88
Position
complement(475090..476844)
AA seq 584 aa
MNHILINAIYSEEIRVGIVKNKKLTGLNIETSLNKKTKGNIYHGKISRVEQSLEAAFVDY
GKEKQGFLPFKEVAETLHNDVKAKGEKLTISDVLKEGQEIIVQIEKEERGNKGAALSTYI
NLAGAYMILMPNNPKNHGISRQIVALDRQSLKEIISKIILPNHSGLIIRTAGSGKSFEEL
QWEVDYLSDLWKSINTATLTRSAPFLIYQESDIIIRTLRDHLRSDTDSVIIDELEAFQNA
KEFVSFVLPHYLDRIKFFDVSEHSLFNHMGIEAQVKSVFNREVSLRTGAIIVFDPTEALT
AIDINSARATKGADIEETAYNTNLEATKEIALQLQLRDIGGLVVIDFIDMASEEHRVSIE
KAMEKATNADRARIQIGTISQFGLLEMSRQRLMNSVTESVEKPCSACHGRGTTPTIPTLA
LTILRQLEDGCNAAKQTAHLTIQSSIEVITYILNEKRQEIIKLEGKHGIKITLLPNPYMQ
FPNFTINKQKGSKRSQHKSYQSISKPQHVLAENGLSDQAEIPAINVNRPSTRVPEKKISL
FEKIKNVLFGRKKKQPNKHRINPNNRRPNVNNNQNNTTKQQKSQ
NT seq 1755 nt   +upstreamnt  +downstreamnt
atgaatcatattttaatcaatgcaatttattccgaagaaatcagagtaggtattgtcaaa
aacaaaaaactaactggccttaatatagaaactagccttaataaaaaaactaaaggtaat
atctatcatggcaaaatttctcgagtagaacaatcactagaagcagcattcgttgactac
ggtaaagaaaagcaaggatttttaccttttaaagaagttgcagaaacgttacacaatgat
gtcaaagctaaaggtgaaaaactaactatttctgatgttttaaaagaagggcaagaaatt
attgttcaaattgaaaaagaagagcgtggtaataaaggtgcagcactcagcacttatatc
aatcttgctggtgcttatatgattttaatgccaaataatccgaaaaatcatggcatatca
agacaaatagtcgctttagatagacaatctttaaaagaaattattagcaaaattattcta
cctaaccattcaggtttaattattcgcactgcaggttctggtaaaagttttgaagagttg
caatgggaagtggattatctttctgacttatggaaatcaattaatacagcgactttaaca
cgcagcgcgcctttcttaatttatcaagaaagtgatattattattcgtacattacgcgat
catcttcgttctgatactgacagtgttattattgacgaattagaagcttttcaaaatgcc
aaagaatttgtcagttttgtgttgccacattacctggaccgcataaagttttttgatgtt
tctgaacattctttatttaaccatatgggcattgaagctcaggttaaaagcgtatttaat
cgagaagtatcgctacgaacaggcgccatcattgtctttgatccgactgaagcacttact
gccattgatatcaactctgctcgcgctactaaaggtgctgacattgaagaaaccgcttat
aacaccaaccttgaagcaactaaagaaattgctctacaactacaattaagggacattggt
ggattggtcgtgattgattttatcgacatggcttctgaagaacatagagtatcaatcgaa
aaagccatggaaaaagccactaatgcagatcgagcgcgtatccaaatcggcactatttct
caatttggtttacttgaaatgtcaagacaacgcttgatgaattcagtcactgaatcagtc
gaaaaaccttgttctgcttgtcatggtcgtggcactacaccaaccattccaactttagca
ttaaccattttaagacagcttgaagacggttgtaatgctgccaagcaaacagcacactta
accattcaatcaagtatagaagtcattacttacattttgaatgaaaaacgtcaagaaata
ataaaattagagggcaagcatggcattaaaatcaccttactacccaatccatatatgcaa
tttcctaatttcaccattaataaacaaaaaggaagtaaaaggtcacagcataaaagctat
caaagtatttcaaagccacaacatgtactagccgagaatggtctttcagatcaagctgaa
attccagctattaatgtaaatagacctagcacgcgcgttcctgaaaagaaaatttcttta
tttgagaaaataaaaaatgttttgtttggaaggaagaaaaaacaacccaataaacataga
ataaatcctaacaataggaggcccaatgtgaataacaatcaaaataatactaccaaacaa
caaaaatctcaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (31)   

Download RDF
DBGET integrated database retrieval system