KEGG   Rickettsia monacensis: RMONA_02995
Entry
RMONA_02995       CDS       T03824                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
rmc  Rickettsia monacensis
Pathway
rmc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rmc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    RMONA_02995 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rmc03021]
    RMONA_02995 (rpoC)
   03400 DNA repair and recombination proteins [BR:rmc03400]
    RMONA_02995 (rpoC)
Enzymes [BR:rmc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     RMONA_02995 (rpoC)
Transcription machinery [BR:rmc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     RMONA_02995 (rpoC)
DNA repair and recombination proteins [BR:rmc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      RMONA_02995 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Biotin_lipoyl_2 Peptidase_M23 RnfC_N
Other DBs
NCBI-ProteinID: CEO16997
UniProt: A0A0B7IYH7
Position
501711..505829
AA seq 1372 aa
MSVVNFYGQLSNTQQFDQIRINIASPDQVRSWSFGEVTKPETINYRTFKPEKDGLFCARI
FGPVKDYECLCGKYKRMKNRGITCEKCGVEVTVSRVRRERMGHIELAAPVAHIWFLKSLP
SRISTLLDMTMRDVEKILYFENYIVVDPGLSILQKGELLTEEELQKAKDKYGEDAFTASI
GAEVIQQMLKELDFSKLKQELYEELQTTFSEIKKKKLVKRLKLVEDFLESENKPEWMIMD
VLPVIPPEIRPLVMLDGGRFATSDLNELYRRVINRNNRLKKLIKSKAPDIIVRNEKRMLQ
EAVDALFDNGRRGRAAKNANKRPFKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPE
LKLHQCGLPKKMALELFKPFIYSKLELYGIATTIKAAKRMVEAEKPEVWDVLEEVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHIPLSIEAQLEA
RVFMMSTNNILSPANGRPIIVPDKDIVLGLYYLTLAFDNEVGEGMMFSDLAEMEHALYNK
FITIHTKIKYRRNQLNAEGKMVHVIIDTTYGRLMVGELLPSNPNIEFKFINKQLTKKDIS
LVIDLVYRHCGQKATVIFADQLMKLGFKYACSSGISFGMDDMVVPESKSTHINETQLEIK
EFEQQYSNGLITYGEKYNKVVDAWSRCTDRVANDMMKDIATPPINDDPNHQKINAIYMMA
ISGARGSFQQIKQLGGMRGLMTKSNGQIIQTPIISNFKEGLTEFECFNSANGMRKGQIDT
ALKTASSGYLTRKLVDVAQDCIITEKDCGTDKGIEVKSVIEGGEVIVPLAEKILGRTAAI
DIFHPVTNDLILNKGELINEVKLEQIESAGLDRIMIKSVLTCESTTGICSICYGRDLATG
TLVSEGEAIGVIAAQSIGEPGTQLTMRTFHIGGAATKGAEVSSVEASYDAKVKIISRNVV
INSEERKIVMSRNCELLLLDNNGNEKARHKISYGARLLVDDGDMVIKTQKLAEWDPYTIP
IITEKSGKVLFKDMVEGISIRDVTDEATGIPSKVIIESKQYSRGAELRPRIQLLDAKGEV
ITLSNGLEARYYLPVGAVLSVEDGVQISVGDIIARIPKESTTTKDITGGLPRVAELVEAR
RPKDHAVIAEVDGRVEFGKDYKSKRRIIIHPIDETMSIEYMVPKGKHVVVNEGDFVKKGD
LLIDGNPVLQDILKVMGVEVLANYIVKEVQAVYRLQGVKIDDKHIEVIIRQMLQKVEVTD
SGGTTLLAGEKIDRHEFDEINEKAIKNGLKPAEAQLILQGITKASLQTRSFISAASFQET
TRVLTEAAIAGKVDKLRGLKENVIVGRLVPAGTGYFMDKMRKAAVKLDEENA
NT seq 4119 nt   +upstreamnt  +downstreamnt
atgagcgtagtaaatttttacggacaattaagtaatactcaacaatttgatcagataagg
attaatatagcaagtcccgatcaagtacgttcgtggtctttcggtgaagtaacaaagcct
gaaacaattaactatcgaacttttaaacctgagaaagacggtttattttgtgcaagaatt
tttggtccggtaaaagattacgaatgtctctgcggtaaatataagcggatgaaaaaccgt
ggtattacatgtgagaaatgcggcgttgaagttacggtttctagagtaagacgtgaaaga
atgggacatatagagcttgcggctcccgttgctcatatttggtttttaaagtcattgcct
tcaagaattagtacgcttcttgatatgacaatgcgagatgtagagaagattctttatttt
gaaaattatatagtagttgatccagggttatcgattttacaaaaaggcgaactcttaaca
gaggaagaattacagaaagcaaaagataagtacggtgaagatgcatttactgcctctata
ggtgcagaagtaatacaacaaatgcttaaagagcttgatttttcaaagttaaagcaagaa
ttatacgaggaattacaaaccactttctcagaaatcaaaaagaaaaaattagtaaagcgt
ttaaaattagtagaggattttttagagtcggaaaacaagccggaatggatgattatggat
gttttgccggttattcctcctgaaattagaccgcttgttatgcttgacggcggaagattt
gctacttcagacttaaatgaactttatagaagagtaattaatagaaataatcgtttaaag
aaattaataaagtcaaaagctcctgatataatagtcagaaacgaaaaaagaatgttacaa
gaagcggtggatgcgttatttgataacggtcgtcgcggtagagcagcgaaaaatgctaat
aagcgtccatttaagtcattaagtgatatgcttaaaggtaagcaggggcgtttccgtcag
aacttgctcggtaagagggttgactattcaggacgttcggttatcgtggtaggacctgag
cttaaacttcaccagtgcggtttacctaaaaaaatggctctggagttatttaagccgttt
atttattctaagcttgagttgtacggcatcgctacaactattaaagctgctaaaagaatg
gtggaagctgaaaaacctgaagtttgggacgtgcttgaagaggtaattagagagcatccg
gttttacttaatagggctccgacgttacataggcttggtattcaagcatttgaaccgcta
ttaattgaaggtaaagcgatccagcttcatccgcttgtttgtgctgcgttcaatgcagat
tttgacggtgatcagatggcggtacatatcccattatcgattgaagcacagcttgaagct
agggtatttatgatgtctacaaataatatcttaagccctgcaaacggtcgtcctattatt
gtaccggataaagatatagtgcttggtttatattatctaacccttgcatttgataatgaa
gtaggcgaagggatgatgttctcagatttagctgagatggaacatgctttatataataaa
tttataactattcatacaaagataaaatatcgcagaaatcagttaaatgccgaaggtaaa
atggtccatgttatcattgatactacttacggtaggttaatggtcggtgagttattgcct
tctaatcctaatatagaattcaagtttattaataaacaactaactaaaaaagacatatca
ttagttatagatttagtttatcgtcactgtggtcaaaaagctacggtaatttttgccgat
cagctaatgaaactaggttttaaatatgcttgttcttcaggtatttcttttggaatggac
gatatggtagtaccggaatctaagagtactcatatcaatgaaactcagcttgaaataaaa
gaatttgaacaacaatattcaaacggtttaattacttacggagagaaatataacaaagta
gttgatgcgtggtcaagatgtaccgatagagtagcaaacgacatgatgaaagatattgct
acgccgccgattaatgatgatccaaatcatcagaaaataaatgctatatatatgatggct
atttccggagcaagaggttctttccagcaaattaagcagctaggcggtatgcgaggttta
atgaccaaatcaaacggtcaaattatacaaactcctattatctctaactttaaggaagga
ttaactgaatttgagtgttttaattctgctaacggaatgcgtaaagggcaaatagatacg
gctttaaaaacggcaagctcaggttacttaacaagaaaattagtagatgttgcacaagat
tgtattattactgaaaaagattgtggaactgataaaggaattgaagttaagagtgttatt
gaaggcggggaagttatagtacctttagctgaaaagattttaggtcgtactgctgctatc
gatatatttcatccggtaactaatgatctaattctcaataaaggcgagcttattaatgaa
gtaaagttagagcagattgagtcggctggactcgacagaattatgataaaatccgtatta
acctgtgaaagtactaccggtatatgtagcatatgttacggtagggaccttgctaccggt
acattagtatcggagggtgaagcaatcggggttattgctgctcagtctatcggtgaaccg
ggtacgcagcttacaatgagaactttccatatcggaggagcggcaacaaaaggtgctgag
gtttcttccgtagaagcttcctatgacgcaaaagtgaaaattataagccgtaacgttgtt
attaattccgaagaacgcaaaattgttatgagccgaaattgtgaattattattgcttgat
aataacggtaatgaaaaggctcgtcataaaatttcatacggtgctagattacttgttgat
gacggtgatatggttattaaaacgcaaaaactagcggagtgggatccttatactataccg
attatcacagagaagtcaggtaaagttttattcaaagatatggttgagggtatttctatt
cgtgacgtaactgacgaagctaccggaataccgagtaaagttattattgaatcaaagcaa
tattcacgcggtgcagaattacgtccgcgtatacagcttttagatgctaaaggtgaagtt
ataaccttatcaaacggtttagaagctagatattacttgccggttggagcagttttaagc
gtagaagacggagtacaaatatcggtaggtgatatcattgcacgtataccgaaagaatca
accactactaaagatattaccggtggtttaccgagagttgccgagcttgtagaagcaaga
cgtcctaaagatcacgcagttattgccgaggttgacggtagagtagaattcggtaaagac
tataaatctaagagacgtattattatacatccgattgatgaaacaatgtctattgagtat
atggtaccaaaaggcaagcatgttgtagttaacgaaggtgactttgttaaaaaaggcgat
ttattgattgacggtaatccagtacttcaagatattttaaaagtaatgggcgtagaggtt
cttgcaaattatattgttaaggaggttcaagccgtttatcgtctacaaggtgtaaagatt
gatgataagcacatagaagttattatccgtcagatgttacaaaaagtagaggttacggat
tcaggcggaactacgttattagcaggtgaaaaaatagatagacatgaattcgatgagata
aatgaaaaagctattaaaaacggtttaaaacctgctgaagcacaattaatattacaaggt
attactaaagcttctctgcaaactagatcgtttatctctgcggcatcattccaagagact
actagagttttaactgaagcagctattgccggtaaagtagataagttacgaggattaaaa
gaaaacgtgatagttggacgattagtacctgccggaaccggttactttatggataaaatg
cgtaaagcagctgtaaagcttgacgaagagaatgcataa

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