KEGG   Rhopalosiphum maidis (corn leaf aphid): 113555633
Entry
113555633         CDS       T06065                                 
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
  KO
K12813  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:5.6.2.6]
Organism
rmd  Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rmd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    113555633
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rmd03041]
    113555633
Enzymes [BR:rmd01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     113555633
Spliceosome [BR:rmd03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    113555633
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    113555633
SSDB
Motif
Pfam: OB_NTP_bind HA2_N HA2_C Helicase_C DEAD AAA_19 AAA_22 Flavi_DEAD T2SSE AAA_30 nSTAND3 TsaE SRP54
Other DBs
NCBI-GeneID: 113555633
NCBI-ProteinID: XP_026815895
Position
3:40568949..40574852
AA seq 869 aa
MASSDSDEDRRERDKFAERLKKKDKDRTRNIAIPRSDKKAYEEAAKRLKLENEREKEMVI
PRLRIESRRKYLEKRKDDKVTELEADILDDEYLFDKEDLSQREIFDREHKKKLLSLAKEH
EKARELENVQRYRMPQDIKDDQMEYEMEVDKAPITEQQKWEEEQMSSAVYKFGAKRQEKE
QYELLIDNQIEFIQTANLPGTDEEKSEITEKQKKKLSIEETKKSLPIYKFKKDLIRAIKD
HQILIIEGETGSGKTTQIPQYLHEAGFTENNKIIGCTQPRRVAAMSVAARVAEEMSVKLG
NEVGYSIRFEDCTSERTIIKYMTDGTLHREFLSEPDLQSYSVMIVDEAHERTLHTDILFG
LVKDVIRFRPDLKLLISSATLDAQKFSEFFDDAPIFRIPGRRFPVDIYYTKAPEADYIDA
CVVSILQIHVTQPLGDILVFLTGQEEIETCHELLQERVRRLGSQIKELILLPVYSNLPTE
MQAKIFEPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLIVVPI
SKASANQRAGRAGRVAAGKCFRLYTSWAYKSELEDNTVPEIQRINLGNAVLMLKALGIHD
LIHFDFLDPPPHETLVLALEQLYALGALNHKGELTKLGRRMAEFPLDPMMAKMLLASEKY
KCSEEIASIAAMLNVNSAIFYRPKDKLILADTARKNFFQQGGDHLALLNIYNQWANTDFS
TNWCYENYIQHRSMRRARDVRDQLVGLMQRVEMEIVSNPTETVNIRKAITAGYFYHIARL
SKGSYRTVKHNQTVIIHPNSSLFEELPRWVLYHELVLTTKEYMRQVTEIDSKWLREVAPH
YYQDRELEDSTNKKVPRTLGKTSSELKMK
NT seq 2610 nt   +upstreamnt  +downstreamnt
atggcttctagtgacagtgatgaggatcgcagagaacgagataagtttgccgaaaggctt
aaaaaaaaagacaaagacagaactcgtaatattgctattcctcgatcagataaaaaagct
tatgaagaagcagcaaagcgattaaaattagaaaatgaacgtgagaaagaaatggttatt
ccacgacttcgtattgagtctcgtcgtaaataccttgaaaaaagaaaagatgataaggtt
accgaacttgaagccgatatcttagacgatgaatatttatttgataaagaagatttatcg
caacgtgaaatttttgatcgtgaacacaaaaagaagttattaagtcttgcaaaagaacat
gaaaaagctagagaacttgaaaatgttcaacgttatcggatgcctcaagatatcaaagat
gaccaaatggagtatgaaatggaagtggataaagcaccaattactgaacaacaaaaatgg
gaagaagaacaaatgtcttctgctgtttataaatttggtgctaaaagacaagaaaaagaa
cagtatgaattattgattgataatcaaatagagtttattcaaactgcaaatttgcctggc
acagatgaggaaaagtctgaaattactgaaaaacaaaagaaaaaactcagtatagaagag
acaaaaaagagtttacctatatataaattcaaaaaagatctgataagagctattaaagat
catcaaatactcatcatagaaggtgaaactggttctggtaagacaacacaaattccacaa
tatctacatgaagctggtttcacagaaaataacaaaataattggatgtactcaacctaga
agagtagctgctatgtcagttgcagctcgtgtagctgaggaaatgtcggttaaacttgga
aatgaagttggttacagtatacgttttgaagattgtacttcagagcgtactataataaaa
tacatgactgatggaacattgcatagagagtttttgtctgaaccagatttacagtcttac
agtgtgatgattgtagatgaagctcatgaacgtacccttcacactgatattttatttgga
ttagtaaaggatgttataagatttagaccagatttgaaattattaatatcaagtgccact
ttagatgctcagaagttttctgaattctttgatgatgctcctatatttagaatacctgga
agacgtttccctgtagatatttattacacaaaagcgcctgaggctgattatattgacgca
tgtgttgtgtctatattacagatacatgtaacacaaccacttggagatatattagtcttt
ttaactggccaggaagagattgagacttgccatgaattattgcaggagcgagtccgcagg
cttggttctcaaatcaaagaactgattttactaccagtttatagtaatctacctaccgag
atgcaagccaaaatttttgagcctacacctcccaatgctagaaaagttgttttggccacc
aatatagcagaaacttctttaacaatagataatattatttatgttattgacccaggtttt
tgtaaacaaaataatttcaattcacgtacaggcatggaatctttaatagttgtaccaata
tcaaaggcaagtgctaatcaaagagctgggagagctggtcgagtagctgctggtaaatgt
tttcgtttatatacttcatgggcttataaaagtgaacttgaagacaatacagttccagaa
attcaaagaattaatttgggtaatgctgtgttgatgttgaaagctcttggtattcatgac
ttgatacattttgatttcttagatccccctccacatgaaacactggtactcgcattggaa
caactttatgcattgggcgcattgaatcacaagggtgaattaaccaaattaggacgtcgt
atggctgaattcccattagacccaatgatggcaaaaatgcttttggcttctgagaaatat
aaatgttcagaagaaattgcttccatagcagcaatgttaaatgtaaatagtgctatattt
tatagacccaaagataaattaattttagctgatacagctcgaaaaaatttttttcaacaa
ggtggtgatcatttagctttattaaacatttataaccaatgggctaatacagattttagt
acaaattggtgttatgaaaattatattcaacatagatcaatgcgcagagctcgagatgtt
agagatcaattagttggattaatgcaacgtgttgaaatggagatagtttcaaatccaacc
gaaactgttaatattcgaaaagccataactgctggttatttttatcacattgcaagacta
tcaaaaggtagttatcgcactgttaaacataatcaaactgttattattcatccaaatagc
agtttatttgaagagcttccgagatgggttctataccatgagttggtattaacaactaaa
gaatatatgagacaagttacagagattgatagtaaatggctacgtgaagtagctcctcat
tactatcaagatagagaacttgaagactccactaataaaaaagtacctaggacattagga
aaaacaagttctgaactaaaaatgaaataa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (13)   
   Pfam (13)   
All databases (23)   

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