KEGG   Roseovarius mucosus: ROSMUCSMR3_02541
Entry
ROSMUCSMR3_02541  CDS       T04779                                 
Symbol
dnaE1
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
rmm  Roseovarius mucosus
Pathway
rmm03030  DNA replication
rmm03430  Mismatch repair
rmm03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rmm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    ROSMUCSMR3_02541 (dnaE1)
   03430 Mismatch repair
    ROSMUCSMR3_02541 (dnaE1)
   03440 Homologous recombination
    ROSMUCSMR3_02541 (dnaE1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rmm03032]
    ROSMUCSMR3_02541 (dnaE1)
   03400 DNA repair and recombination proteins [BR:rmm03400]
    ROSMUCSMR3_02541 (dnaE1)
Enzymes [BR:rmm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     ROSMUCSMR3_02541 (dnaE1)
DNA replication proteins [BR:rmm03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     ROSMUCSMR3_02541 (dnaE1)
DNA repair and recombination proteins [BR:rmm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     ROSMUCSMR3_02541 (dnaE1)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon DUF655
Other DBs
NCBI-ProteinID: ARE84010
UniProt: A0A1V0RQF8
Position
2608201..2611701
AA seq 1166 aa
MSADPRFIHLRVHTEYSLLEGAMRLKKLPGLCVAAGMPAVAVTDTNNMFAALEFSVSAQG
AGVQPIMGCQVDLAYLSLAPGERAKPPAPLVLLAQSECGYENLMKLNSCLYLRGDGSLPH
VTLTELAHHAEGVICLTGGPDGPVGRLLQGGQRPAAEALMQRLAQAFGDRLYVELQRHPG
DGGAPEAERLTERGLIEMAYAMGLPLVATNDVYFPKSDMYEAHDAMLCVAEGAYVDQSAP
RRRLTPQHYFKSQEEMAALFADLPEALENTVEIARRCAFGAYKRNPILPKFADDEVEELR
RQARAGLAARLAVIPHAAPVEDYEKRLEFELGIIEGMGFPGYFLIVADFIKWAKDHDIPV
GPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIQYV
QEKYGRDRVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSKMIPVEGVKPVSIEKALA
DEPRLREEAKNEEVVDRLLTYAQQVEGLLRNASTHAAGVVIGDRPLDALVPVYQDPRSDM
PATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDMIRKAGRPLNVAADGTVLYDPPEGFE
YDIGAIPLDDEKSYRLYASAKTVAVFQVESSGMMDALKRMKPTCIEDIVALVALYRPGPM
ENIPTYCEVKNGLRELESIHPSIDHILEETQGIIVYQEQVMQIAQVMAGYSLGGADLLRR
AMGKKIAEEMAKERPKFEKGAMENGVDKKKASEVFDLLEKFANYGFNKSHAAAYAVVSYQ
TAWLKANHPVEFMAGVMNCDIHLTDKLAVYFQEVKKGLSLPWAAPCVNRSEATFDVQGGV
LHYALGALKNVGGEAMKLITVGRGNRPFATLYDVAQRVDLKRVGKRPLEMLARAGAFDAL
DRNRRRVFESIEALMSYSAAIHEQKNSSQVSLFGEAGDDLPEPRLAPVDDWLPAERLTEE
FKAVGFYLSGHPLDDYMTVLRRQDVKTLDEVTAQAERGPALVKMAGVVAGRQERKSARGN
RFAFAQLSDTTGGYEVTLFSDTLEKCREFLETGAQVVITAEATLEADQLKLLCRAVQPID
GMVAGAGAVGLRIFVDQPGAIGSVAAVLQGASQAARGARPGPIHFCLMGAGLPGEVEIDS
GAEYPVTPQIKGAIKSLTGVVMVEEI
NT seq 3501 nt   +upstreamnt  +downstreamnt
atgagcgctgatccccgattcattcacctgcgggtgcataccgaatattccctgctggag
ggggcgatgcggctcaagaagctgcccggcctctgcgtggccgcaggcatgcccgccgtc
gccgtgaccgacaccaacaacatgtttgccgcgctagagttttccgtgagcgcgcagggc
gcgggcgtgcagccgatcatgggctgtcaggtcgatctggcctatctcagcctggcaccc
ggagagcgcgcgaaaccgcctgcccccctcgtcctcttggcgcagagtgagtgcgggtat
gagaacctgatgaagctcaactcctgcctttatctgcgcggcgatggcagcctgccgcat
gtgacgctgaccgagttggcgcatcatgccgagggggtgatctgcctgacgggtgggccg
gatgggccggtgggtcggctcttgcagggggggcagcgcccggcggcggaggcgttgatg
cagcgtctggcgcaggcgtttggcgaccggctctatgtcgaattgcagcgtcatcccggt
gacggtggcgcgcccgaggccgagcgcctgaccgagcgtggtctgatcgagatggcctat
gccatgggcctgccgctggtggcgaccaacgatgtctactttcccaaatccgacatgtat
gaggcgcatgatgccatgctctgcgtggccgagggggcctatgtcgatcaaagcgcgccg
cgccgccgcctgaccccgcagcactatttcaaaagccaagaagagatggccgcgcttttt
gccgatttgcccgaggcactggaaaacacggtcgaaatcgcgcgccgctgcgcctttggg
gcctataagcgcaatccgatcttgccgaaattcgcggatgacgaggttgaggaactgcgc
cgtcaggcgcgggcggggcttgctgcgcgcctggcggttatcccccatgccgcgccggtg
gaagactatgaaaagcgcctcgaattcgagctgggcatcattgagggtatgggctttccc
ggctattttctgatcgtggccgatttcatcaaatgggccaaggatcacgatattccggtg
gggccggggcggggctcgggggcgggcagtctggtggcctatgcgctgaccatcaccgat
cttgatccgctgcgctacagcctgctttttgaacggttcctgaacccagagcgggtcagc
atgcccgactttgacatcgatttttgcatggatcgccgcgaggaggtgatccaatacgtg
caagagaaatatggccgtgaccgggtgggccagatcatcacctttggcgcgctcttgtcc
aaggcggctgtgcgcgacatcgggcgcgtgttgcaaatgccctatgggcaggtggaccgc
ctgtccaagatgatcccggtcgaaggcgtcaagccggtgagcatcgaaaaggcgctggcc
gacgagccgcgcctgcgcgaagaggccaagaacgaagaggtcgtggatcggcttttgacc
tatgcgcaacaggttgaggggctgttgcgcaatgcctcgacccatgccgccggggtggtg
atcggcgaccggccgcttgatgcgctcgtgcctgtctaccaagacccgcgctccgatatg
cccgcaacccagttcaacatgaaatgggtggaacaggcggggctggtcaagttcgacttt
ctcggcctcaagacgctgacggtcattcagaacgcggtcgacatgatccgcaaggcgggc
cgcccgctgaatgtggcggcggatggcaccgtgctctacgatccccccgaggggtttgag
tatgacatcggggcgatcccgctcgatgacgagaaatcctataggctctatgcgagtgcc
aagacagtcgccgtgttccaggtggaatcgagcggcatgatggatgcgctcaagcgcatg
aaacccacctgcatcgaggatatcgtggcgcttgtggcgctctaccgtcccggcccgatg
gagaatatcccgacctattgcgaggtgaagaacggcctgcgtgagctcgagtcgattcac
ccctcgattgaccatatcctagaggaaacccaaggcatcatcgtttatcaggaacaggtg
atgcaaatcgcgcaggtgatggcgggctattccttgggcggtgctgacctgttgcgccgc
gccatgggcaagaaaatcgccgaagaaatggccaaggagcgcccgaaattcgagaaaggc
gccatggaaaatggtgtcgacaagaaaaaggccagcgaggtctttgacctgctcgagaaa
tttgccaactacggctttaacaaatcccacgcggcggcctatgcggtggtcagctatcaa
accgcctggctcaaggccaatcacccggtcgaattcatggctggggtgatgaattgcgat
attcacctcacggataagctggcggtgtatttccaagaggtgaaaaaggggctgagcctg
ccttgggccgcgccttgcgtcaatcgctctgaggcgacgttcgatgtgcagggcggcgtg
ctgcactatgcgctgggcgcgctcaagaacgtgggcggcgaggcgatgaagctgatcacc
gtggggcggggcaaccggccctttgccacgctctatgatgtggcgcagcgggtcgatctc
aaacgggtgggcaagcgcccgctggaaatgctggcccgcgccggggcgtttgacgcgctg
gaccgcaaccgccgccgcgtgttcgagagcatcgaggcgctgatgagctattcagcggcg
atccatgagcaaaagaattccagtcaggtctcgctctttggcgaggcgggcgatgatttg
cctgaaccgcgattggccccggttgatgattggctgcccgccgagcggctgaccgaggaa
ttcaaggctgttgggttctacctctcggggcatccgcttgacgattatatgaccgtgttg
cggcgtcaggatgtgaaaacgctggacgaggtgacagcacaggccgaacgcggcccggcg
ctggtcaagatggccggggtcgtggccgggcggcaagagcggaaatcggcacgtggcaac
cgctttgcctttgcgcagctcagcgatacgaccggcggctacgaggtgacattgttttcc
gacacgctcgagaaatgccgcgaatttctggaaaccggcgcgcaggtggtgatcaccgcc
gaggcgacgctggaggcggatcagttgaaactgctctgccgcgccgttcagccgattgac
gggatggtggccggggcgggcgcggtgggcctgcggatctttgtggatcagcctggggca
atcggatcggttgccgcggtgttgcagggggccagccaagcggcgcgcggtgcgcgcccc
ggcccgatccatttctgcctgatgggcgcgggtctgcccggcgaggtcgagattgacagc
ggcgcggaatatcccgtgacgcctcagatcaaaggcgcgatcaagagcctgacaggcgtg
gtgatggtcgaggaaatctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (45)   
   KEGG ORTHOLOGY (1)   
   RefGene (42)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (61)   

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