KEGG   PATHWAY: rn01110
Entry
rn01110                     Pathway                                
Name
Biosynthesis of secondary metabolites
Pathway map
rn01110  Biosynthesis of secondary metabolites
rn01110

Module
M00012  Glyoxylate cycle [PATH:rn01110]
M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:rn01110]
M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:rn01110]
M00021  Cysteine biosynthesis, serine => cysteine [PATH:rn01110]
M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:rn01110]
M00023  Tryptophan biosynthesis, chorismate => tryptophan [PATH:rn01110]
M00024  Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:rn01110]
M00026  Histidine biosynthesis, PRPP => histidine [PATH:rn01110]
M00039  Monolignol biosynthesis, phenylalanine/tyrosine => monolignol [PATH:rn01110]
M00040  Tyrosine biosynthesis, chorismate => arogenate => tyrosine [PATH:rn01110]
M00095  C5 isoprenoid biosynthesis, mevalonate pathway [PATH:rn01110]
M00096  C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:rn01110]
M00097  beta-Carotene biosynthesis, GGAP => beta-carotene [PATH:rn01110]
M00102  Ergocalciferol biosynthesis, squalene 2,3-epoxide => ergosterol/ergocalciferol [PATH:rn01110]
M00112  Tocopherol/tocotorienol biosynthesis, homogentisate + phytyl/geranylgeranyl-PP => tocopherol/tocotorienol [PATH:rn01110]
M00113  Jasmonic acid biosynthesis [PATH:rn01110]
M00114  Ascorbate biosynthesis, plants, fructose-6P => ascorbate [PATH:rn01110]
M00116  Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:rn01110]
M00117  Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:rn01110]
M00119  Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:rn01110]
M00121  Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:rn01110]
M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:rn01110]
M00137  Flavanone biosynthesis, phenylalanine => naringenin [PATH:rn01110]
M00138  Flavonoid biosynthesis, naringenin => pelargonidin [PATH:rn01110]
M00364  C10-C20 isoprenoid biosynthesis, bacteria [PATH:rn01110]
M00365  C10-C20 isoprenoid biosynthesis, archaea [PATH:rn01110]
M00366  C10-C20 isoprenoid biosynthesis, plants [PATH:rn01110]
M00367  C10-C20 isoprenoid biosynthesis, non-plant eukaryotes [PATH:rn01110]
M00368  Ethylene biosynthesis, methionine => ethylene [PATH:rn01110]
M00369  Cyanogenic glycoside biosynthesis, tyrosine => dhurrin [PATH:rn01110]
M00370  Glucosinolate biosynthesis, tryptophan => glucobrassicin [PATH:rn01110]
M00371  Castasterone biosynthesis, campesterol => castasterone [PATH:rn01110]
M00372  Abscisic acid biosynthesis, beta-carotene => abscisic acid [PATH:rn01110]
M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:rn01110]
M00527  Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine [PATH:rn01110]
M00532  Photorespiration [PATH:rn01110]
M00565  Trehalose biosynthesis, D-glucose 1P => trehalose [PATH:rn01110]
M00661  Paspaline biosynthesis, geranylgeranyl-PP + indoleglycerol phosphate => paspaline [PATH:rn01110]
M00672  Penicillin biosynthesis, aminoadipate + cycteine + valine => penicillin [PATH:rn01110]
M00673  Cephamycin C biosynthesis, aminoadipate + cycteine + valine => cephamycin C [PATH:rn01110]
M00674  Clavaminate biosynthesis, arginine + glyceraldehyde-3P => clavaminate [PATH:rn01110]
M00675  Carbapenem-3-carboxylate biosynthesis, pyrroline-5-carboxylate + malonyl-CoA => carbapenem-3-carboxylate [PATH:rn01110]
M00736  Nocardicin A biosynthesis, L-pHPG + arginine + serine => nocardicin A [PATH:rn01110]
M00773  Tylosin biosynthesis, methylmalonyl-CoA + malonyl-CoA => tylactone => tylosin [PATH:rn01110]
M00774  Erythromycin biosynthesis, propanoyl-CoA + methylmalonyl-CoA => deoxyerythronolide B => erythromycin A/B [PATH:rn01110]
M00775  Oleandomycin biosynthesis, malonyl-CoA + methylmalonyl-CoA => 8,8a-deoxyoleandolide => oleandomycin [PATH:rn01110]
M00776  Pikromycin/methymycin biosynthesis, methylmalonyl-CoA + malonyl-CoA => narbonolide/10-deoxymethynolide => pikromycin/methymycin [PATH:rn01110]
M00777  Avermectin biosynthesis, 2-methylbutanoyl-CoA/isobutyryl-CoA => 6,8a-Seco-6,8a-deoxy-5-oxoavermectin 1a/1b aglycone => avermectin A1a/B1a/A1b/B1b [PATH:rn01110]
M00778  Type II polyketide backbone biosynthesis, acyl-CoA + malonyl-CoA => polyketide [PATH:rn01110]
M00779  Dihydrokalafungin biosynthesis, octaketide => dihydrokalafungin [PATH:rn01110]
M00780  Tetracycline/oxytetracycline biosynthesis, pretetramide => tetracycline/oxytetracycline [PATH:rn01110]
M00781  Nogalavinone/aklavinone biosynthesis, deoxynogalonate/deoxyaklanonate => nogalavinone/aklavinone [PATH:rn01110]
M00782  Mithramycin biosynthesis, 4-demethylpremithramycinone => mithramycin [PATH:rn01110]
M00783  Tetracenomycin C/8-demethyltetracenomycin C biosynthesis, tetracenomycin F2 => tetracenomycin C/8-demethyltetracenomycin C [PATH:rn01110]
M00784  Elloramycin biosynthesis, 8-demethyltetracenomycin C => elloramycin A [PATH:rn01110]
M00785  Cycloserine biosynthesis, arginine/serine => cycloserine [PATH:rn01110]
M00786  Fumitremorgin alkaloid biosynthesis, tryptophan + proline => fumitremorgin C/A [PATH:rn01110]
M00787  Bacilysin biosynthesis, prephenate => bacilysin [PATH:rn01110]
M00788  Terpentecin biosynthesis, GGAP => terpentecin [PATH:rn01110]
M00789  Rebeccamycin biosynthesis, tryptophan => rebeccamycin [PATH:rn01110]
M00790  Pyrrolnitrin biosynthesis, tryptophan => pyrrolnitrin [PATH:rn01110]
M00793  dTDP-L-rhamnose biosynthesis [PATH:rn01110]
M00794  dTDP-6-deoxy-D-allose biosynthesis [PATH:rn01110]
M00795  dTDP-beta-L-noviose biosynthesis [PATH:rn01110]
M00796  dTDP-D-mycaminose biosynthesis [PATH:rn01110]
M00797  dTDP-D-desosamine biosynthesis [PATH:rn01110]
M00798  dTDP-L-mycarose biosynthesis [PATH:rn01110]
M00799  dTDP-L-oleandrose biosynthesis [PATH:rn01110]
M00800  dTDP-L-megosamine biosynthesis [PATH:rn01110]
M00801  dTDP-L-olivose biosynthesis [PATH:rn01110]
M00802  dTDP-D-forosamine biosynthesis [PATH:rn01110]
M00803  dTDP-D-angolosamine biosynthesis [PATH:rn01110]
M00805  Staurosporine biosynthesis, tryptophan => staurosporine [PATH:rn01110]
M00808  Violacein biosynthesis, tryptophan => violacein [PATH:rn01110]
M00814  Acarbose biosynthesis, sedoheptulopyranose-7P => acarbose [PATH:rn01110]
M00815  Validamycin A biosynthesis, sedoheptulopyranose-7P => validamycin A [PATH:rn01110]
M00819  Pentalenolactone biosynthesis, farnesyl-PP => pentalenolactone [PATH:rn01110]
M00823  Chlortetracycline biosynthesis, pretetramide => chlortetracycline [PATH:rn01110]
M00824  9-membered enediyne core biosynthesis, malonyl-CoA => 3-hydroxyhexadeca-4,6,8,10,12,14-hexaenoyl-ACP => 9-membered enediyne core [PATH:rn01110]
M00825  10-membered enediyne core biosynthesis, malonyl-CoA => 3-hydroxyhexadeca-4,6,8,10,12,14-hexaenoyl-ACP => 10-membered enediyne core [PATH:rn01110]
M00826  C-1027 benzoxazolinate moiety biosynthesis, chorismate => benzoxazolinyl-CoA [PATH:rn01110]
M00827  C-1027 beta-amino acid moiety biosynthesis, tyrosine => 3-chloro-4,5-dihydroxy-beta-phenylalanyl-PCP [PATH:rn01110]
M00828  Maduropeptin beta-hydroxy acid moiety biosynthesis, tyrosine => 3-(4-hydroxyphenyl)-3-oxopropanoyl-PCP [PATH:rn01110]
M00829  3,6-Dimethylsalicylyl-CoA biosynthesis, malonyl-CoA => 6-methylsalicylate => 3,6-dimethylsalicylyl-CoA [PATH:rn01110]
M00830  Neocarzinostatin naphthoate moiety biosynthesis, malonyl-CoA => 2-hydroxy-5-methyl-1-naphthoate => 2-hydroxy-7-methoxy-5-methyl-1-naphthoyl-CoA [PATH:rn01110]
M00831  Kedarcidin 2-hydroxynaphthoate moiety biosynthesis, malonyl-CoA => 3,6,8-trihydroxy-2-naphthoate => 3-hydroxy-7,8-dimethoxy-6-isopropoxy-2-naphthoyl-CoA [PATH:rn01110]
M00832  Kedarcidin 2-aza-3-chloro-beta-tyrosine moiety biosynthesis, azatyrosine => 2-aza-3-chloro-beta-tyrosyl-PCP [PATH:rn01110]
M00833  Calicheamicin biosynthesis, calicheamicinone => calicheamicin [PATH:rn01110]
M00834  Calicheamicin orsellinate moiety biosynthesis, malonyl-CoA => orsellinate-ACP => 5-iodo-2,3-dimethoxyorsellinate-ACP [PATH:rn01110]
M00835  Pyocyanine biosynthesis, chorismate => pyocyanine [PATH:rn01110]
M00837  Prodigiosin biosynthesis, L-proline => prodigiosin [PATH:rn01110]
M00838  Undecylprodigiosin biosynthesis, L-proline => undecylprodigiosin [PATH:rn01110]
M00846  Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:rn01110]
M00847  Heme biosynthesis, archaea, siroheme => heme [PATH:rn01110]
M00848  Aurachin biosynthesis, anthranilate => aurachin A [PATH:rn01110]
M00849  C5 isoprenoid biosynthesis, mevalonate pathway, archaea [PATH:rn01110]
M00868  Heme biosynthesis, animals and fungi, glycine => heme [PATH:rn01110]
M00875  Staphyloferrin B biosynthesis, L-serine => staphyloferrin B [PATH:rn01110]
M00876  Staphyloferrin A biosynthesis, L-ornithine => staphyloferrin A [PATH:rn01110]
M00877  Kanosamine biosynthesis, glucose 6-phosphate => kanosamine [PATH:rn01110]
M00889  Puromycin biosynthesis, ATP => puromycin [PATH:rn01110]
M00890  Roseoflavin biosynthesis, FMN => roseoflavin [PATH:rn01110]
M00891  Ditryptophenaline biosynthesis, tryptophan + phenylalanine => ditryptophenaline [PATH:rn01110]
M00893  Lovastatin biosynthesis, malonyl-CoA => lovastatin acid [PATH:rn01110]
M00894  Cannabidiol biosynthesis, malonyl-CoA => cannabidiol/dronabinol [PATH:rn01110]
M00900  Crocin biosynthesis, crocetin => crocin [PATH:rn01110]
M00901  Fumiquinazoline biosynthesis, tryptophan + alanine + anthranilate => fumiquinazoline [PATH:rn01110]
M00902  Podophyllotoxin biosynthesis, coniferyl alcohol => podophyllotoxin [PATH:rn01110]
M00903  Fosfomycin biosynthesis, phosphoenolpyruvate => fosfomycin [PATH:rn01110]
M00904  Dapdiamides biosynthesis, L-2,3-diaminopropanoate => dapdiamide A/B/C [PATH:rn01110]
M00905  Grixazone biosynthesis, aspartate 4-semialdehyde => grixazone B [PATH:rn01110]
M00906  Ethynylserine biosynthesis, lysine => ethynylserine [PATH:rn01110]
M00910  Phenylalanine biosynthesis, chorismate => arogenate => phenylalanine [PATH:rn01110]
M00917  Phytosterol biosynthesis, squalene 2,3-epoxide => campesterol/sitosterol [PATH:rn01110]
M00918  Aerobactin biosynthesis, lysine => aerobactin [PATH:rn01110]
M00921  Cyclooctatin biosynthesis, dimethylallyl-PP + isopentenyl-PP => cyclooctatin [PATH:rn01110]
M00927  Gibberellin A12 biosynthesis, GAPP => GA12 [PATH:rn01110]
M00928  Gibberellin A4/A1 biosynthesis, GA12/GA53 => GA4/GA1 [PATH:rn01110]
M00929  Gibberellin A1 biosynthesis, GGPP => GA1 [PATH:rn01110]
M00932  Phylloquinone biosynthesis, chorismate (+ phytyl-PP) => phylloquinol [PATH:rn01110]
M00933  Plastoquinone biosynthesis, homogentisate + solanesyl-PP => plastoquinol [PATH:rn01110]
M00934  Mycinamicin biosynthesis, malonyl-CoA + methylmalonyl-CoA => protomycinolide IV => mycinamicin II [PATH:rn01110]
M00936  Melatonin biosynthesis, plants, tryptophan => serotonin => melatonin [PATH:rn01110]
M00937  Aflatoxin biosynthesis, malonyl-CoA => aflatoxin B1 [PATH:rn01110]
M00940  Flavanone biosynthesis, p-coumaroyl-CoA => liquiritigenin [PATH:rn01110]
M00941  Isoflavone biosynthesis, liquiritigenin/naringenin => daidzein/genistein [PATH:rn01110]
M00942  Pterocarpan biosynthesis, daidzein => medicarpin [PATH:rn01110]
M00943  Reticuline biosynthesis, dopamine + 4HPAA => (S)-reticuline [PATH:rn01110]
M00944  Morphine biosynthesis, (S)-reticuline => morphine [PATH:rn01110]
M00945  Sanguinarine biosynthesis, (S)-reticuline => sanguinarine [PATH:rn01110]
M00946  Noscapine biosynthesis, (S)-reticuline => noscapine [PATH:rn01110]
M00951  Cremeomycin biosynthesis, aspartate/3,4-AHBA => cremeomycin [PATH:rn01110]
M00952  Benzoxazinoid biosynthesis, indoleglycerol phosphate => DIMBOA-glucoside [PATH:rn01110]
M00953  Mugineic acid biosynthesis, methionine => 3-epihydroxymugineic acid [PATH:rn01110]
M00961  Betacyanin biosynthesis, L-tyrosine => amaranthin [PATH:rn01110]
M00962  Psilocybin biosynthesis, tryptophan => psilocybin [PATH:rn01110]
M00963  Chanoclavine aldehyde biosynthesis, tryptophan => chanoclavine-I aldehyde [PATH:rn01110]
M00964  Fumigaclavine biosynthesis, chanoclavine-I aldehyde => fumigaclavine C [PATH:rn01110]
M00965  Vindoline biosynthesis, tabersonine => vindoline [PATH:rn01110]
Related
pathway
rn00010  Glycolysis / Gluconeogenesis
rn00020  Citrate cycle (TCA cycle)
rn00030  Pentose phosphate pathway
rn00053  Ascorbate and aldarate metabolism
rn00073  Cutin, suberine and wax biosynthesis
rn00100  Steroid biosynthesis
rn00130  Ubiquinone and other terpenoid-quinone biosynthesis
rn00220  Arginine biosynthesis
rn00230  Purine metabolism
rn00232  Caffeine metabolism
rn00250  Alanine, aspartate and glutamate metabolism
rn00253  Tetracycline biosynthesis
rn00254  Aflatoxin biosynthesis
rn00260  Glycine, serine and threonine metabolism
rn00261  Monobactam biosynthesis
rn00270  Cysteine and methionine metabolism
rn00280  Valine, leucine and isoleucine degradation
rn00281  Geraniol degradation
rn00290  Valine, leucine and isoleucine biosynthesis
rn00300  Lysine biosynthesis
rn00311  Penicillin and cephalosporin biosynthesis
rn00331  Clavulanic acid biosynthesis
rn00332  Carbapenem biosynthesis
rn00333  Prodigiosin biosynthesis
rn00340  Histidine metabolism
rn00380  Tryptophan metabolism
rn00400  Phenylalanine, tyrosine and tryptophan biosynthesis
rn00401  Novobiocin biosynthesis
rn00402  Benzoxazinoid biosynthesis
rn00403  Indole diterpene alkaloid biosynthesis
rn00404  Staurosporine biosynthesis
rn00405  Phenazine biosynthesis
rn00440  Phosphonate and phosphinate metabolism
rn00460  Cyanoamino acid metabolism
rn00500  Starch and sucrose metabolism
rn00521  Streptomycin biosynthesis
rn00522  Biosynthesis of 12-, 14- and 16-membered macrolides
rn00523  Polyketide sugar unit biosynthesis
rn00524  Neomycin, kanamycin and gentamicin biosynthesis
rn00525  Acarbose and validamycin biosynthesis
rn00564  Glycerophospholipid metabolism
rn00592  alpha-Linolenic acid metabolism
rn00630  Glyoxylate and dicarboxylate metabolism
rn00650  Butanoate metabolism
rn00740  Riboflavin metabolism
rn00770  Pantothenate and CoA biosynthesis
rn00860  Porphyrin metabolism
rn00900  Terpenoid backbone biosynthesis
rn00901  Indole alkaloid biosynthesis
rn00902  Monoterpenoid biosynthesis
rn00904  Diterpenoid biosynthesis
rn00905  Brassinosteroid biosynthesis
rn00906  Carotenoid biosynthesis
rn00908  Zeatin biosynthesis
rn00909  Sesquiterpenoid and triterpenoid biosynthesis
rn00940  Phenylpropanoid biosynthesis
rn00941  Flavonoid biosynthesis
rn00942  Anthocyanin biosynthesis
rn00943  Isoflavonoid biosynthesis
rn00944  Flavone and flavonol biosynthesis
rn00945  Stilbenoid, diarylheptanoid and gingerol biosynthesis
rn00950  Isoquinoline alkaloid biosynthesis
rn00960  Tropane, piperidine and pyridine alkaloid biosynthesis
rn00965  Betalain biosynthesis
rn00966  Glucosinolate biosynthesis
rn00996  Biosynthesis of various alkaloids
rn00997  Biosynthesis of various other secondary metabolites
rn00998  Biosynthesis of various antibiotics
rn00999  Biosynthesis of various plant secondary metabolites
rn01051  Biosynthesis of ansamycins
rn01053  Biosynthesis of siderophore group nonribosomal peptides
rn01055  Biosynthesis of vancomycin group antibiotics
rn01056  Biosynthesis of type II polyketide backbone
rn01057  Biosynthesis of type II polyketide products
rn01059  Biosynthesis of enediyne antibiotics
KO pathway
ko01110   

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