Entry |
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Name |
Circadian rhythm - Rattus norvegicus (rat)
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Description |
Circadian rhythm is an internal biological clock, which enables to sustain an approximately 24-hour rhythm in the absence of environmental cues. In mammals, the circadian clock mechanism consists of cell-autonomous transcription-translation feedback loops that drive rhythmic, 24-hour expression patterns of core clock components. The first negative feedback loop is a rhythmic transcription of period genes (PER1, PER2, and PER3) and chryptochrome genes (CRY1 and CRY2). PER and CRY proteins form a heterodimer, which acts on the CLOCK/BMAL1 heterodimer to repress its own transcription. PER and CRY proteins are phosphorylated by casein kinase epsilon (CKIepsilon), which leads to degradation and restarting of the cycle. The second loop is a positive feedback loop driven by the CLOCK/BMAL1 heterodimer, which initiates transcription of target genes containing E-box cis-regulatory enhancer sequences.
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Class |
Organismal Systems; Environmental adaptation
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Pathway map |

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Other DBs |
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Organism |
Rattus norvegicus (rat) [GN: rno]
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Gene |
63840 | Per2; period circadian protein homolog 2 [KO:K02633] |
78962 | Per3; period circadian protein homolog 3 [KO:K21945] |
29657 | Arntl; aryl hydrocarbon receptor nuclear translocator-like protein 1 [KO:K02296] |
60447 | Clock; circadian locomoter output cycles protein kaput isoform 1 [KO:K02223] [EC:2.3.1.48] |
316351 | Npas2; neuronal PAS domain-containing protein 2 [KO:K09026] |
252917 | Nr1d1; nuclear receptor subfamily 1 group D member 1 isoform 1 [KO:K03728] |
300807 | Rora; nuclear receptor ROR-alpha isoform X3 [KO:K08532] |
368158 | Rorc; nuclear receptor ROR-gamma isoform X1 [KO:K08534] |
79431 | Bhlhe40; class E basic helix-loop-helix protein 40 [KO:K03729] |
117095 | Bhlhe41; class E basic helix-loop-helix protein 41 [KO:K03730] |
287280 | Skp1; S-phase kinase-associated protein 1 [KO:K03094] |
303024 | Fbxw11; F-box/WD repeat-containing protein 11 [KO:K03362] |
361765 | Btrc; F-box/WD repeat-containing protein 1A [KO:K03362] |
83803 | Prkab1; 5'-AMP-activated protein kinase subunit beta-1 [KO:K07199] |
64562 | Prkab2; 5'-AMP-activated protein kinase subunit beta-2 [KO:K07199] |
25520 | Prkag1; 5'-AMP-activated protein kinase subunit gamma-1 [KO:K07200] |
373545 | Prkag2; 5'-AMP-activated protein kinase subunit gamma-2 [KO:K07200] |
301518 | Prkag3; 5'-AMP-activated protein kinase subunit gamma-3 [KO:K07200] |
81646 | Creb1; cyclic AMP-responsive element-binding protein 1 isoform A [KO:K05870] |
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Compound |
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Reference |
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Authors |
Camacho F, Cilio M, Guo Y, Virshup DM, Patel K, Khorkova O, Styren S, Morse B, Yao Z, Keesler GA. |
Title |
Human casein kinase Idelta phosphorylation of human circadian clock proteins period 1 and 2. |
Journal |
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Reference |
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Authors |
Panda S, Hogenesch JB, Kay SA. |
Title |
Circadian rhythms from flies to human. |
Journal |
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Reference |
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Authors |
Harmer SL, Panda S, Kay SA. |
Title |
Molecular bases of circadian rhythms. |
Journal |
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Reference |
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Authors |
Young MW, Kay SA. |
Title |
Time zones: a comparative genetics of circadian clocks. |
Journal |
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Reference |
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Authors |
Honma S, Kawamoto T, Takagi Y, Fujimoto K, Sato F, Noshiro M, Kato Y, Honma K. |
Title |
Dec1 and Dec2 are regulators of the mammalian molecular clock. |
Journal |
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Reference |
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Authors |
Preitner N, Damiola F, Lopez-Molina L, Zakany J, Duboule D, Albrecht U, Schibler U. |
Title |
The orphan nuclear receptor REV-ERBalpha controls circadian transcription within the positive limb of the mammalian circadian oscillator. |
Journal |
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Reference |
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Authors |
Fu L, Lee CC. |
Title |
The circadian clock: pacemaker and tumour suppressor. |
Journal |
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Reference |
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Authors |
Schibler U, Sassone-Corsi P. |
Title |
A web of circadian pacemakers. |
Journal |
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Reference |
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Authors |
Hogenesch JB, Gu YZ, Moran SM, Shimomura K, Radcliffe LA, Takahashi JS, Bradfield CA. |
Title |
The basic helix-loop-helix-PAS protein MOP9 is a brain-specific heterodimeric partner of circadian and hypoxia factors. |
Journal |
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Reference |
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Authors |
Shirogane T, Jin J, Ang XL, Harper JW |
Title |
SCFbeta-TRCP controls clock-dependent transcription via casein kinase 1-dependent degradation of the mammalian period-1 (Per1) protein. |
Journal |
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Reference |
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Authors |
Busino L, Bassermann F, Maiolica A, Lee C, Nolan PM, Godinho SI, Draetta GF, Pagano M |
Title |
SCFFbxl3 controls the oscillation of the circadian clock by directing the degradation of cryptochrome proteins. |
Journal |
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Reference |
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Authors |
Takahashi JS, Hong HK, Ko CH, McDearmon EL |
Title |
The genetics of mammalian circadian order and disorder: implications for physiology and disease. |
Journal |
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Reference |
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Authors |
Mertens I, Husson SJ, Janssen T, Lindemans M, Schoofs L |
Title |
PACAP and PDF signaling in the regulation of mammalian and insect circadian rhythms. |
Journal |
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Related pathway |
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KO pathway |
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