KEGG   Rattus norvegicus (rat): 114108Help
Entry
114108            CDS       T01003                                 

Gene name
Pdlim3, Actn2lp, Alp
Definition
(RefSeq) PDZ and LIM domain 3
  KO
K23353  PDZ and LIM domain protein 1/2/3/4
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09190 Not Included in Pathway or Brite
  09193 Unclassified: signaling and cellular processes
   99992 Structural proteins
    114108 (Pdlim3)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DUF4749 PDZ LIM PDZ_6 PDZ_2 Lar_restr_allev
Motif
Other DBs
NCBI-GeneID: 114108
NCBI-ProteinID: NP_446102
RGD: 620427
Ensembl: ENSRNOG00000012658
UniProt: Q66HS7
Position
16q11
AA seq 362 aa AA seqDB search
MPQNVVLPGPASWGFRLSGGIDFNQPLVITRITPGSKAEAANLCPGDMILAIDGFGTESM
THADAQDRIKAASYQLCLKIDRAETRLCPAVSEDGKAHPFKINLEAEPQDVNYFEHKHNI
RPKPFIIPGRTSGCSTPSGIDCGSGRSTPSSVSTVSTICPGDLKVAAKMAPNIPLEMELP
GVKIVHAQFNTPMQLYSDDNIMETLQGQVSTALGETPSMSEPTASVPPQSDVYRMLHDNR
DEPAAPRQSGSFRVLQELVNDGSDDRPAGTRSVRPVTKVHGGAGGAQRMPLCDKCGSGIV
GAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCEMHARARARPPEGYDTVTLYP
KA
NT seq 1089 nt NT seq  +upstreamnt  +downstreamnt
atgccccaaaacgtagttctcccgggccctgcgtcctgggggttcagactctcaggaggc
atagacttcaaccagcctttggtcatcaccaggatcactccgggaagcaaggcagaagcc
gccaacctgtgccctggcgacatgatactggctatcgatggctttggtacggagtccatg
actcatgctgatgctcaggacaggatcaaagcagcatcttaccagttgtgtctcaagatt
gacagggcagaaactcgcttatgtcccgcagtgtcggaagatgggaaagcgcatcccttt
aaaatcaacctagaggctgaaccgcaggatgtgaactactttgaacacaagcacaatatt
cggcccaaacctttcataattccaggccgaaccagtggctgcagcactccttccggtatt
gactgtggcagtggacgtagcaccccttcttccgtcagtaccgttagtacgatctgccca
ggtgacttgaaagttgctgctaagatggcccctaacattcctttggaaatggaacttccg
ggcgtgaagattgtacatgctcagtttaacactcctatgcagttgtactcagatgacaat
attatggaaacacttcagggtcaggtttccacagctctaggggagacaccctccatgagt
gaacccacagcttcagttccccctcagtcggacgtgtaccgaatgctgcacgacaatcgg
gatgaaccagctgctcctcgccagtcaggctccttcagggtcctgcaggagctggtgaac
gacgggtctgatgaccgtcctgctggaactcgaagtgtgaggccggttactaaagtccat
ggcggggctggcggtgcccagaggatgccactctgtgacaagtgtggcagtggtattgta
ggtgctgtggtcaaggcccgggataagtaccggcaccccgagtgctttgtgtgtgctgac
tgtaacctcaacctcaagcagaaaggttacttcttcgtggagggggagctgtattgtgag
atgcacgcaagagcccgggcgaggcccccagaaggctacgacaccgtcactctgtacccc
aaagcttaa

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Ontology (1)   
   KEGG BRITE (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (5)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (9)   
   RefSeq(nuc) (3)   
   GenBank (3)   
   EMBL (3)   
Protein domain (6)   
   Pfam (6)   
All databases (32)   

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