KEGG   Rattus norvegicus (rat): 117526
Entry
117526            CDS       T01003                                 

Gene name
Tbp
Definition
(RefSeq) TATA-box-binding protein
  KO
K03120  transcription initiation factor TFIID TATA-box-binding protein
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03022  Basal transcription factors
rno05016  Huntington disease
rno05017  Spinocerebellar ataxia
rno05165  Human papillomavirus infection
rno05166  Human T-cell leukemia virus 1 infection
rno05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    117526 (Tbp)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    117526 (Tbp)
  09172 Infectious disease: viral
   05166 Human T-cell leukemia virus 1 infection
    117526 (Tbp)
   05165 Human papillomavirus infection
    117526 (Tbp)
  09164 Neurodegenerative disease
   05016 Huntington disease
    117526 (Tbp)
   05017 Spinocerebellar ataxia
    117526 (Tbp)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    117526 (Tbp)
   03021 Transcription machinery [BR:rno03021]
    117526 (Tbp)
Transcription factors [BR:rno03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   TATA-binding proteins
    117526 (Tbp)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     117526 (Tbp)
  RNA polymerase III system
    TFIIIB
     117526 (Tbp)
  RNA polymerase I system
    SL1/TIF-1B
     117526 (Tbp)
SSDB
Motif
Pfam: TBP EPL1 Spt20 TFIIA Presenilin
Other DBs
NCBI-GeneID: 117526
NCBI-ProteinID: NP_001004198
RGD: 67398
Ensembl: ENSRNOG00000001489
UniProt: Q66HB1
Position
1
AA seq 318 aa
MDQNNSLPPYAQGLASPQGAMTPGIPIFSPMMPYGTGLTPQPVQNTNSLSILEEQQRQQQ
QQQQQQQQQQQQAVATAAASVQQSTSQQPTQGASGQTPQLFHSQTLTTAPLPGTTPLYPS
PMTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVI
MRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGS
CDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEI
YEAFENIYPILKGFRKTT
NT seq 957 nt   +upstreamnt  +downstreamnt
atggaccagaacaacagccttccaccttatgctcagggcttggcctccccacagggtgcc
atgactcctggaattcccatcttcagtccaatgatgccttacggcacagggcttactcca
cagcctgttcagaacaccaatagtttatctattttggaagagcaacaaagacagcagcag
cagcagcagcagcagcaacagcagcagcaacagcaggcagtagcaactgcagcagcctca
gtacagcaatcaacatctcagcagcccacacagggtgcctcaggccagaccccacaactc
ttccattctcaaactctaaccacagcaccattgccaggcaccacccccttgtatccttca
ccaatgactcctatgacccctatcactcctgccacaccagcctctgagagctctgggatt
gtaccacagctccaaaatattgtatccaccgtgaatcttggctgtaaacttgacctaaag
accattgcacttcgtgccagaaatgctgaatataatcccaagcggtttgctgcagtcatc
atgagaataagagagccacgaacaactgcgttgatcttcagttctgggaaaatggtgtgc
acaggagccaagagtgaagaacaatccagactagcagcaagaaaatacgctagagttgtg
cagaagctgggcttcccagctaagttcttagacttcaagatccagaacatggtggggagc
tgtgatgtgaagttccccataaggctggaaggccttgtgttgacccaccagcagttcagt
agctatgagccagaattatttcctggattaatctacagaatgatcaaacccagaattgtt
ctccttatttttgtttctggaaaagttgtattaacaggtgctaaagttagagcagagatt
tatgaagcatttgaaaacatctaccccatcttaaagggattcaggaagaccacatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (6)   
   KEGG PATHWAY (6)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (28)   

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KEGG   Rattus norvegicus (rat): 680050
Entry
680050            CDS       T01003                                 

Gene name
Tbpl2
Definition
(RefSeq) TATA box-binding protein-like 2
  KO
K03120  transcription initiation factor TFIID TATA-box-binding protein
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03022  Basal transcription factors
rno05016  Huntington disease
rno05017  Spinocerebellar ataxia
rno05165  Human papillomavirus infection
rno05166  Human T-cell leukemia virus 1 infection
rno05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    680050 (Tbpl2)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    680050 (Tbpl2)
  09172 Infectious disease: viral
   05166 Human T-cell leukemia virus 1 infection
    680050 (Tbpl2)
   05165 Human papillomavirus infection
    680050 (Tbpl2)
  09164 Neurodegenerative disease
   05016 Huntington disease
    680050 (Tbpl2)
   05017 Spinocerebellar ataxia
    680050 (Tbpl2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    680050 (Tbpl2)
   03021 Transcription machinery [BR:rno03021]
    680050 (Tbpl2)
Transcription factors [BR:rno03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   TATA-binding proteins
    680050 (Tbpl2)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     680050 (Tbpl2)
  RNA polymerase III system
    TFIIIB
     680050 (Tbpl2)
  RNA polymerase I system
    SL1/TIF-1B
     680050 (Tbpl2)
SSDB
Motif
Pfam: TBP DUF3378
Other DBs
NCBI-GeneID: 680050
NCBI-ProteinID: NP_001092831
RGD: 1596837
Ensembl: ENSRNOG00000033682
UniProt: A6H909
Position
3
AA seq 344 aa
MEEDMYVDIFLDPYTFQDDFPPATSQLFSPGAPLDVHPLNPSNPETVFHSHLGAVKKAPS
DFSSVDLSFLPDELTQENKDRTVTGNKVTNEESFRTQDWQSQLQLPDEQGSGLNLNSNSS
PDTQSCLCSHDADSNQLSSETPNSNALPVVLISSMTPMNPVTECSGIVPQLQNVVSTANL
ACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTTALIFSSGKVVCTGAKSEDESRLAA
RKYARVVQKLGFPVRFFNFKIQNMVASCDVKFPIRLEILALTHRQFSSYEPELFPGLIYK
MVKPQVVLLIFASGKVVLTGAKERSEIYEAFENMYPILESFKKV
NT seq 1035 nt   +upstreamnt  +downstreamnt
atggaggaggacatgtacgtggacattttcctggacccttataccttccaggatgacttt
cctccagctacgtctcaactattcagcccaggagcgcctttagatgtgcacccacttaat
ccatccaatccagagactgtatttcattcacatcttggtgcagtcaaaaaggcacccagt
gacttttcatctgtggatctaagcttcttaccagatgaacttacccaagaaaataaagac
cgaactgtcactggaaacaaagtcacaaatgaggaaagctttaggactcaagattggcaa
agtcagttgcagttgcctgatgaacaaggcagtgggctgaacttgaatagcaacagttca
ccagatacccagtcatgtctgtgctctcatgatgctgactccaaccagctctcttcagaa
acaccaaattccaatgccttacctgtggtattgatatcatccatgacaccaatgaaccct
gttacagaatgttctggaattgtgcctcaattacagaatgtagtttccactgcaaatctg
gcctgtaaattggatctgagaaaaatagctttgaatgccaaaaacacagaatataatcca
aagaggtttgctgcagtcataatgaggatccgagagccaaggaccacagctcttatattt
agctctgggaaagtggtctgtacaggagccaaaagtgaagacgagtctcggctggcagca
agaaagtatgctcgcgtggtgcagaagctggggttccccgtcagattcttcaattttaaa
attcagaacatggttgcaagctgtgatgtgaaatttcccatcaggctggagattttggca
ctaacccatcggcagttcagtagttatgagcctgaactgttccctggccttatttataag
atggtgaaaccgcaggttgtgctgctcatctttgcatctggaaaggttgtactgacaggt
gccaaagagcgttctgagatctacgaagcatttgaaaacatgtatcctattctagaaagt
tttaagaaagtctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (6)   
   KEGG PATHWAY (6)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (24)   

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KEGG   Rattus norvegicus (rat): 689030
Entry
689030            CDS       T01003                                 

Gene name
Tbpl1
Definition
(RefSeq) TATA box-binding protein-like protein 1
  KO
K03120  transcription initiation factor TFIID TATA-box-binding protein
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03022  Basal transcription factors
rno05016  Huntington disease
rno05017  Spinocerebellar ataxia
rno05165  Human papillomavirus infection
rno05166  Human T-cell leukemia virus 1 infection
rno05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    689030 (Tbpl1)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    689030 (Tbpl1)
  09172 Infectious disease: viral
   05166 Human T-cell leukemia virus 1 infection
    689030 (Tbpl1)
   05165 Human papillomavirus infection
    689030 (Tbpl1)
  09164 Neurodegenerative disease
   05016 Huntington disease
    689030 (Tbpl1)
   05017 Spinocerebellar ataxia
    689030 (Tbpl1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    689030 (Tbpl1)
   03021 Transcription machinery [BR:rno03021]
    689030 (Tbpl1)
Transcription factors [BR:rno03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   TATA-binding proteins
    689030 (Tbpl1)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     689030 (Tbpl1)
  RNA polymerase III system
    TFIIIB
     689030 (Tbpl1)
  RNA polymerase I system
    SL1/TIF-1B
     689030 (Tbpl1)
SSDB
Motif
Pfam: TBP DUF3378
Other DBs
NCBI-GeneID: 689030
NCBI-ProteinID: NP_001120673
RGD: 1597456
Ensembl: ENSRNOG00000011114
UniProt: D4A898
Position
1
AA seq 186 aa
MDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATI
WSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEF
TKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPNVKAVATAVEQIYPFVFE
SRKEIL
NT seq 561 nt   +upstreamnt  +downstreamnt
atggatgcagacagtgatgttgcattggacattttaattacaaatgtagtctgtgttttt
agaacaagatgccatttgaacttaaggaagattgctttggagggagcaaatgtaatttat
aagcgtgatgttgggaaagtattaatgaagcttagaaaacctagaattacagctacaatt
tggtcctcaggaaaaattatttgcactggagcaacgagtgaagaagaagctaaatttggt
gccagacgtttagcccgtagtctgcagaaactaggttttcaggtaatttttacagatttt
aaggttgtgaatgttttggcagtctgtaacatgccctttgaaatccgtttgccagaattc
acaaagaacaacagacctcatgccagctatgaacctgaacttcatcctgctgtgtgctat
cggataaagtctctaagagctacgttacagatattttcaacaggaagtatcacggtgaca
gggcccaatgtaaaggctgtggccacagccgtggagcagatctacccattcgtgtttgaa
agcaggaaggagattttgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (6)   
   KEGG PATHWAY (6)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (10)   
   UniProt (1)   
   RefSeq(pep) (9)   
DNA sequence (23)   
   RefSeq(nuc) (9)   
   GenBank (7)   
   EMBL (7)   
Protein domain (2)   
   Pfam (2)   
All databases (51)   

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