KEGG T01003: 171163

Rattus norvegicus (rat): 171163

Entry

171163            CDS       T01003

Symbol

Slc6a13

Name

(RefSeq) sodium- and chloride-dependent GABA transporter 2

K05046

solute carrier family 6 (neurotransmitter transporter, GABA) member 13

Organism

rno Rattus norvegicus (rat)

Pathway

rno04082

Neuroactive ligand signaling

rno04721

Synaptic vesicle cycle

rno04727

GABAergic synapse

Brite

KEGG Orthology (KO) [BR:rno00001]
09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04082 Neuroactive ligand signaling
    171163 (Slc6a13)
09150 Organismal Systems
  09156 Nervous system
   04727 GABAergic synapse
    171163 (Slc6a13)
   04721 Synaptic vesicle cycle
    171163 (Slc6a13)
09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:rno02000]
    171163 (Slc6a13)
Transporters [BR:rno02000]
Solute carrier family (SLC)
  SLC6: Sodium- and chloride-dependent neurotransmitter transporter
   171163 (Slc6a13)

SSDB

Motif

Pfam:

SNF

Other DBs

NCBI-GeneID:

NCBI-ProteinID:

RGD:

Ensembl:

UniProt:

Position

4:156211381..156248491

AA seq 602 aa
MDNRVSGTTSNGETKPVCPVMEKVEEDGTLEREQWTNKMEFVLSVAGEIIGLGNVWRFPY
LCYKNGGGAFFIPYLIFLFTCGIPVFFLETALGQYTNQGGITAWRKICPIFEGIGYASQM
IVSLLNVYYIVVLAWALFYLFSSFTTDLPWGSCSHEWNTENCVEFQKTNNSLNVTSENAT
SPVIEFWERRVLKISDGIQHLGSLRWELVLCLLLAWIICYFCIWKGVKSTGKVVYFTATF
PYLMLVVLLIRGVTLPGAAQGIQFYLYPNITRLWDPQVWMDAGTQIFFSFAICLGCLTAL
GSYNKYHNNCYRDCVALCILNSSTSFVAGFAIFSILGFMSQEQGVPISEVAESGPGLAFI
AYPRAVVMLPFSPLWACCFFFMVVLLGLDSQFVCVESLVTALVDMYPRVFRKKNRREILI
LIVSVVSFFIGLIMLTEGGMYVFQLFDYYAASGMCLLFVAIFESLCVAWVYGASRFYDNI
EDMIGYKPWPLIKYCWLFFTPAVCLATFLFSLIKYTPLTYNKKYTYPWWGDALGWLLALS
SMVCIPAWSIYKLRTLKGPLRERLRQLVCPAEDLPQKSQPELTSPATPMTSLLRLTELES
NC

NT seq 1809 nt +upstreamnt +downstreamnt
atggataacagggtctcgggaacgaccagtaatggagagacaaagccagtgtgtccagtc
atggagaaggtggaggaagacggtaccttggaacgggagcaatggaccaacaagatggag
ttcgtactgtcagtggcgggagagatcattggcttaggcaacgtctggaggtttccctat
ctctgctacaagaacgggggaggtgccttctttattccctacctcatcttcctatttacc
tgtggcattcctgtcttcttcctggagacagcgcttggccagtacaccaaccagggaggc
atcacagcctggaggaaaatctgtcccatcttcgagggcatcggctatgcctcacagatg
atcgtcagccttctcaatgtctactacatcgttgtcctggcctgggccctcttctacctc
ttcagcagcttcaccactgacctcccctggggtagctgcagccacgagtggaatacagaa
aactgtgtggagttccagaaaaccaacaattccctgaatgtgacttctgagaatgccaca
tcccctgtcatcgagttctgggagaggcgagtcctgaagatctcagatggcatccagcac
ctggggtccctgcgctgggagctggtcctgtgcctcctgcttgcctggatcatctgctat
ttctgcatctggaaaggggtcaagtccacaggcaaggtggtgtacttcacagctactttc
ccttacctcatgctggtggtcctgttgatccgaggagtaacactgcctggagcagcccag
ggaattcagttttacctgtaccccaacatcacacgtctgtgggatccccaggtgtggatg
gatgcgggcacccagatcttcttctcctttgccatctgcctggggtgcctcacggccctg
ggcagctacaacaagtaccacaacaactgctacagggactgcgtcgccctttgcattctc
aacagcagcaccagcttcgtggccgggtttgccatcttctccatcctgggcttcatgtct
caggagcagggcgtacccatatctgaggttgctgaatcaggccctggcctggcattcatc
gcctaccctcgagctgtggtgatgttacctttctcgcctttgtgggcctgctgtttcttc
ttcatggtggttctcctgggactagacagccagtttgtgtgtgtagaaagcctcgtgaca
gcgctggtggacatgtatccccgggtgttccgtaagaagaaccggagggagattctcatc
ctcatcgtgtctgtcgtctctttcttcatcgggctcattatgctcacagagggcggcatg
tacgtgttccagctcttcgactactatgcggccagtggcatgtgtcttctctttgtggcc
atctttgagtccctctgtgtggcttgggtttacggagccagccgcttctatgacaacatt
gaagatatgattgggtacaagccgtggcctcttatcaaatactgttggctctttttcacg
ccagctgtgtgcctggcaaccttcctgttctccctgatcaaatacacgccactgacctac
aacaagaagtacacatatccatggtggggggatgccctggggtggctcctagctctgtcc
tccatggtctgcattcctgcctggagcatctacaagctcaggactctcaagggcccactc
agagagagacttcgccagctcgtgtgcccggctgaagaccttccccagaagagccaacca
gagctgacttctccagcgacaccgatgacgtccctcctcaggctcacagaactggagtct
aactgctag

All links

Gene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (15)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (12)   
DNA sequence (16)   
   RefSeq(nuc) (12)   
   GenBank (2)   
   EMBL (2)   
Protein domain (1)   
   Pfam (1)   
All databases (37)   

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