KEGG   Rattus norvegicus (rat): 192178
Entry
192178            CDS       T01003                                 
Symbol
Tnrc6b
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein
  KO
K18412  trinucleotide repeat-containing gene 6 protein
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    192178 (Tnrc6b)
   03036 Chromosome and associated proteins [BR:rno03036]
    192178 (Tnrc6b)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     192178 (Tnrc6b)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    192178 (Tnrc6b)
SSDB
Motif
Pfam: TNRC6-PABC_bdg Ago_hook RRM_occluded RRM_1
Other DBs
NCBI-GeneID: 192178
NCBI-ProteinID: NP_620200
RGD: 621428
Ensembl: ENSRNOG00000024907
Position
7:112252351..112469829
AA seq 1818 aa
MHTNEGEVEEESSSQVEQEDFVMEGHGKTPPPGEESKQEKEQEREEQLMEDKKRKKEDKK
KKEATQKVTEQKTKVPEVTKPSLSQPTAASPIGSSPSPPVNGGNNAKRVAVPNGQPPSAA
RYMPREVPPRFRCQQDHKVLLKRGQPPPPSCMLLGGGAGPPPCTAPGANPNNAQVTGALL
QSESGTAPESTLGGAAASNYANSTWGPGASSNNGASPNPIHIWDKVIVDGSDMEEWPCIA
SKDTESSSENTTDNNSASNPGSEKSALPGSTTSNKGKGSQCQSASSGNECNLGVWKSDPK
AKSVQSPNSTSDSNNGLGTWRSTSGQDRIGPGSGFSNFNPNSNPSAWPALVQEGTCRKGV
LEAEGSSSSAQVSTVGQASREQQSKMENAGVNFVVSGREQAQIHNTDGPKNGNTNSLNLS
SPNPMENKGMPFGMGLGNTSRSTDAPSQSTGDRKTGSVGSWGAARGPSGADTVSGQSNSG
NNGNNGKDREDSWKGASVPKPTGSQSDSWDNNNRSTGGSWNFGPQDSNDNKWGEGNKMTS
GVSQGEWKQPTGSDELKIGEWSGPNQPNSSTGAWDNQKGHPLPENQGNAQAPCWGRSSSS
AGSEVGGQSTGSNHKAGSSDSHNSGRRSYRPAHPDCQAVLQTLLSRTDLDPRVLSNTGWG
QTQIKQDTVWDIEEVPRPEGKSDKGTEGWESAATQTKNSGGWGDAPSQSNQMKSGWGELS
ASTEWKDPKSTGGWNDYKNNNSSNWGGGRADEKTPSSWNESSCKDQGWGGGRQPNQGWTS
GKNGWGEEVDQVKNNNWESSANKPVSGWGEGGQSEIGTWGNGGNTNLASKGGWEDCKRSP
AWNETGRQPNSWNKQHQQQQQQPPPPQPEASGSWGGPPPPPQGNVRPSNSNWSSGPQPAT
PKDDEPSGWEEPSPQSISRKMDIDDGTSAWGDPNSYNYKNVNLWDKNSQGGPAPREPNLP
TPMTGKSASVWSKSTPPAPDNGTSAWGEPNESSPGWGEMDDAGASATGWGNTPASAPNAM
KPNSKSMQDGWGESDGPVTGARHPSWEEEDDGGVWNTAGSQGSTSSHNSASWGQGGKKQM
KCSIKGNNDSWMNPLAKQFSNMGLLSQTEDNPSSKMDLSVDKKFDVDKRTMNLGDFNDIM
RKDRPGFRPPNSKDLGTTDSGPYFEKGGSHGLFGNSTAQSRGLHTPVQPLSSSPGLRAQV
PPQFISPQVSASMLKQFPNSGLNPGLFNVGPQLSPQQIAMLSQLPQIPQFQLACQLLLQQ
QQQQQLLQNQRKISQAVRQQQEQQLARMVSALQQQQQQQQQQQQQQQQQQQQQRQPSMKH
SPSHPVGPKPHLDNMVPNTLNVGLPDLPTKGPIPGYGSGFSSGGMDYGMVGGKEAGTESR
FKQWTSMMEGLPSVATQEATMHKNGAIVAPGKTRGGSPYNQFDIIPGDTLGGHTGPAGDS
WLPAKSPPTNKIGSKSSNASWPPEFQPGVPWKGIQNIDPESDPYVTPGSVLGGTATSPIV
DTDHQLLRDNTTGSNSSLNTSLPSPGAWPYSASDNSFTNVHSTSAKFPDYKSTWSPDPIG
HNPTHLSNKMWKNHISSRNTTPLPRPPPGLTNPKPASPWSSTAPRSVRGWGTQDSRIASA
STWSDGGSVRPSYWLVLHNLTPQIDGSTLRTICMQHGPLLTFHLNLTQGTALIRYSTKQE
AAKAQTALHMCVLGNTTILAEFATEDEVSRFLAQAQPPTPAATPSAPATGWQSLETSQNQ
ADPVGPALNLFGGSTGLGQWSSSAGGSSGADLAGTSLWGPPNYSSSLWGVPTVEDPHRMG
SPAPLLPGDLLGGGSDSI
NT seq 5457 nt   +upstreamnt  +downstreamnt
atgcacaccaatgagggagaagtagaggaagagagcagctcccaggtggaacaggaggat
tttgtaatggaagggcatggcaagactccacctcctggagaagaaagcaaacaagagaag
gagcaagaaagggaagaacagttaatggaagacaagaaaaggaagaaagaggataaaaag
aaaaaagaagccacccagaaggtcacggaacaaaaaaccaaagtgcccgaagtgacgaaa
ccaagtttaagccaaccaacggccgccagcccaattggcagctctccatcgccaccagtc
aatggtggcaacaatgccaaaagggtggcagtgccgaacggacaaccgccaagcgccgcc
cgctacatgcctcgggaggtgccaccgcgattccgttgccagcaggaccacaaagtgtta
ctaaaacgtgggcagccccctccaccgtcctgcatgctcctagggggtggggcggggcct
cctccctgcacagcacctggagcaaaccccaacaacgcacaagtgacaggagcgctgctg
cagagcgagagtgggacggcaccagagtcaacccttggaggtgctgctgcttcaaattat
gcaaattccacttggggcccgggagcctcctccaacaacggcgcctcccccaacccaatt
cacatctgggacaaggtgattgtagacgggtctgacatggaagagtggccttgtattgcc
agcaaagacactgaatcttcttccgaaaacaccaccgataacaacagtgcctcgaaccct
ggctctgagaagagcgctctgccaggaagcaccactagtaacaaaggcaaagggagccag
tgccagtctgcaagttctgggaatgaatgtaatcttggggtctggaaatctgaccctaag
gctaaatctgttcagtctcccaactctacttcagatagcaacaatggactaggaacctgg
aggagtaccagtggtcaagatagaattggacctggctctggcttcagcaactttaaccca
aatagcaacccatctgcctggccagcattggtccaagaaggaacttgtaggaaaggggtg
ttggaggcagaaggtagcagttccagtgcacaagtcagcacagtaggtcaggcatccagg
gaacagcagtcaaagatggagaatgcgggtgttaattttgttgtctctggcagagaacag
gctcagattcataacactgatggaccaaaaaacggaaacactaactccttgaacttaagt
tcaccaaaccccatggaaaataagggaatgccctttggaatgggcttggggaacacctcc
aggagcactgatgccccttcacaaagcactggagatcgaaagactgggagtgttgggtct
tggggcgcagctagggggccttctggagctgacacagtctctggacaaagcaattctgga
aacaatgggaacaatggaaaagacagagaggactcctggaaaggagcttccgttccaaaa
ccaactgggtcacaaagtgactcttgggacaacaataacaggtctacgggtgggtcctgg
aattttggccctcaggactctaatgacaacaaatggggtgaagggaacaaaatgacatct
ggggtctctcagggagaatggaaacagccgactgggtctgatgagttgaaaattggagaa
tggagtggtccaaaccaaccaaattctagcactggagcatgggacaatcaaaagggccac
cccctcccagaaaaccaaggcaatgcccaggctccctgttggggaagatcttccagctcc
gcaggaagtgaagttggaggtcaaagcactggaagcaaccacaaagcaggaagtagcgac
agtcataattctggtcgtcggtcatacaggcccgcacatcctgattgccaggctgtcttg
cagactcttttgagccggactgatttggaccctagggtgctctcaaacactggctggggc
caaactcaaattaagcaggacacagtgtgggatattgaagaggtgccaaggcctgagggg
aaatctgacaaaggaactgaggggtgggagagcgctgccacacagaccaagaactcaggg
ggctggggagatgcacccagccaaagcaatcaaatgaagtctggatggggggagctctca
gcctcaacagagtggaaagaccccaagagtacaggaggctggaatgactacaagaacaac
aactcttctaactggggaggaggacgagcggatgaaaagacaccttcctcttggaatgag
agttcttgtaaggatcaggggtggggaggtgggcgccagcccaaccaaggatggacttct
gggaagaatggttggggcgaggaggttgatcaagtgaaaaataacaattgggaaagttct
gccaataagcctgtgtctgggtggggtgaaggagggcagagtgaaattggaacttggggc
aatggtgggaatacaaacctcgcttcaaaaggtgggtgggaagattgcaaaagatcccct
gcatggaatgagactggcagacagcctaattcctggaataaacaacaccaacagcagcag
cagcagccaccgccaccacagccagaggcttctggttcatggggaggcccacccccacca
cctcaaggcaatgttcgaccttctaattccaactggagcagtgggccccaacctgcaacc
cctaaggatgatgaacccagtggttgggaggagccatccccacagtcaattagtcgaaaa
atggacatcgatgatggcacttcagcttggggagaccctaacagttataactacaagaat
gtgaacctttgggataagaattctcaagggggcccagcacctcgagaaccaaacctgcct
accccgatgaccggaaaatcagcatcagtctggagcaaaagcacaccacctgctccagat
aatgggacttcagcctggggtgagccaaatgaaagcagtcctgggtggggtgagatggat
gatgcaggagcatcagccacaggctggggaaacacacctgccagcgctcccaatgccatg
aaacccaattccaaatctatgcaagacggctggggggagagtgatggcccagtcacagga
gctcgccatcctagctgggaagaggaagatgatggaggagtctggaacaccgccggctct
cagggaagcacttcctcccacaactcagcaagctggggacaaggaggaaagaaacaaatg
aagtgctcgataaaaggaaacaatgattcgtggatgaatcctcttgccaaacagttttca
aatatgggattgctgagtcaaactgaggataacccaagcagcaaaatggatttgtctgta
gataagaaatttgatgtggacaagagaacaatgaatctcggggattttaatgatatcatg
aggaaggatcgacctgggttccgtccacctaattccaaagacttgggaaccacagacagt
gggccttattttgagaagggcggcagtcatggtttgtttggaaacagcacagcacagtca
agaggcctgcacactccagtgcagccactgagttcttctcctggtctccgggcgcaagtg
cctccccagtttatctccccccaggtttctgcctcaatgctcaagcagttccccaacagt
ggcctgaatccaggtctctttaatgtggggccccagttatctcctcaacaaattgccatg
ctgagccagcttccacagattccccagtttcagttggcttgtcagcttcttctgcagcag
cagcagcagcagcagttgctacagaaccagagaaagatctctcaagcagtgcgccagcag
caagagcagcagctggcaagaatggtgagtgctctccagcagcagcagcagcagcagcag
cagcagcagcagcagcagcagcagcagcagcagcagcagaggcaacctagcatgaagcat
tcaccttctcatcctgttgggcctaagccacatttggacaacatggtacccaacacgctg
aatgtggggctcccagaccttccgaccaaaggaccaatccctggatatggttctggcttt
agctctggtggaatggactatggtatggttggtggcaaggaggctggaactgagtctcgc
ttcaaacagtggacctccatgatggaagggctgccatctgtggccacacaagaagctacc
atgcacaaaaacggcgctatagtggcccctggtaagacccgaggagggtcaccatacaac
cagtttgatataatcccaggtgacacactgggtggccatacgggtcctgctggtgatagc
tggttacctgccaaatctccaccgactaataaaatcggaagtaaatccagcaatgccagt
tggcctccagaattccaaccaggagtgccatggaaaggtatccaaaatatcgaccctgaa
tctgacccctatgtcaccccaggaagtgtgctggggggcacagccacatcgcccattgta
gatactgaccaccaactgctgcgggataacaccacagggtctaattcttccctcaacacc
tcgctgccttcacctggtgcctggccctacagtgcctctgacaactcctttaccaacgtt
catagcacttcagcaaagttccctgattacaaatccacgtggtccccagatcccatagga
cacaaccccactcatctctccaacaagatgtggaaaaaccacatctcctccaggaacact
acaccgctgccccgcccacctcctggcctgaccaaccccaaaccggcatctccttggagc
agcacagcacccagatcggtcagggggtggggaacacaggactcccggattgcctcagcc
tctacctggagtgatggtggctctgttcgtcctagttactggctggttcttcacaatctc
actccacagattgatgggtcaaccttgagaacgatctgcatgcagcatggcccactgctg
acattccatctgaacctaacccagggcacagccctgatccgatatagcaccaaacaagag
gcagccaaggcccagactgcactgcacatgtgtgtgttgggaaacactaccatcctggcc
gagtttgccactgaggatgaagtcagccgctttctggctcaagctcagccccctacacct
gcagcaaccccgagtgcacctgccacagggtggcagtcactggagaccagccagaaccaa
gcagaccccgttggacctgcgctgaaccttttcggtgggtccaccgggctcgggcagtgg
agcagcagcgctggtggcagcagtggggccgatcttgccggcacttccttatggggcccc
ccaaactattcttctagcttgtggggagtcccgacggtggaagatccccataggatgggc
agccctgctcctttactacctggtgaccttctgggaggagggtcggattcaatctga

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