KEGG   Rattus norvegicus (rat): 246118
Entry
246118            CDS       T01003                                 

Gene name
Tubb3
Definition
(RefSeq) tubulin beta-3 chain
  KO
K07375  tubulin beta
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04145  Phagosome
rno04540  Gap junction
rno05010  Alzheimer disease
rno05012  Parkinson disease
rno05014  Amyotrophic lateral sclerosis
rno05016  Huntington disease
rno05020  Prion disease
rno05022  Pathways of neurodegeneration - multiple diseases
rno05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    246118 (Tubb3)
  09144 Cellular community - eukaryotes
   04540 Gap junction
    246118 (Tubb3)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    246118 (Tubb3)
  09164 Neurodegenerative disease
   05010 Alzheimer disease
    246118 (Tubb3)
   05012 Parkinson disease
    246118 (Tubb3)
   05014 Amyotrophic lateral sclerosis
    246118 (Tubb3)
   05016 Huntington disease
    246118 (Tubb3)
   05020 Prion disease
    246118 (Tubb3)
   05022 Pathways of neurodegeneration - multiple diseases
    246118 (Tubb3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    246118 (Tubb3)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:rno04812]
    246118 (Tubb3)
   04147 Exosome [BR:rno04147]
    246118 (Tubb3)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Centrosome formation and ciliogenesis proteins
   Microtubules and associated factors
    Other tubulins
     246118 (Tubb3)
Cytoskeleton proteins [BR:rno04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulins
    246118 (Tubb3)
Exosome [BR:rno04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   246118 (Tubb3)
  Exosomal proteins of colorectal cancer cells
   246118 (Tubb3)
  Exosomal proteins of bladder cancer cells
   246118 (Tubb3)
SSDB
Motif
Pfam: Tubulin Tubulin_C Misat_Tub_SegII Tubulin_3 Tubulin_2
Other DBs
NCBI-GeneID: 246118
NCBI-ProteinID: NP_640347
RGD: 628595
Ensembl: ENSRNOG00000017209
Vega: OTTRNOG00000002194
UniProt: Q4QRB4
Position
19
AA seq 450 aa
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYV
PRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVV
RKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVV
EPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSL
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMM
AACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRG
LKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
EYQQYQDATAEEEGEMYEDDDEESEAQGPK
NT seq 1353 nt   +upstreamnt  +downstreamnt
atgagggagatcgtgcacatccaggccggccagtgcggcaaccagataggggccaagttc
tgggaggtcatcagtgacgagcatggcatagaccccagcggcaactatgtgggggactcg
gacctgcagctggaacgcatcagtgtctactacaatgaggcctcctctcacaagtatgtg
cccagagccattctggtggacctggagcctggaaccatggacagcgttcggtctggggcc
tttggacacctattcaggcctgacaactttatcttcggtcagagtggtgctggcaacaac
tgggccaaagggcactatacagagggcgccgagctggtggactcagtcctggatgtcgtg
aggaaagaatgtgagaattgtgactgcctgcagggcttccagctcactcactcactgggt
gggggcacgggctcaggcatgggcacactgctcatcagcaaagtgcgtgaggagtaccct
gaccgcatcatgaacaccttcagcgtggtgccctcacccaaagtgtcagacaccgtggta
gagccctacaacgccaccctgtccatccaccagctagtggagaacacggatgagacctac
tgcatcgacaatgaagccctctacgacatctgcttccgcaccctcaagctggctacaccc
acctacggggacctcaaccaccttgtgtctgctaccatgagcggagtcaccacctccctt
cgattccctggtcagctcaatgccgacctccgcaagctagctgtcaacatggtgcccttc
ccccgcttgcatttcttcatgcccggctttgccccactaacagcccggggcagccaacag
taccgtgccctgacggtgcctgagctcacccagcagatgttcgacgccaagaacatgatg
gctgcctgtgacccacgccacggccgctacctgaccgtggccaccgtcttccgtgggcgc
atgtccatgaaggaggtggatgagcagatgctggccattcagagtaagaacagtagttac
ttcgtggagtggatccccaacaacgtcaaggtagcggtgtgtgacatcccgccccgaggg
ctcaagatgtcgtccaccttcatcggcaacagcacggccatccaggagctgttcaagcgc
atctccgagcagtttacggccatgttccggcgcaaggccttcctccactggtacacgggc
gaaggcatggatgagatggagttcaccgaggccgagagcaacatgaacgacctggtgtct
gagtaccagcagtaccaggacgccactgccgaggaggagggggagatgtatgaagatgac
gacgaggagtcggaagcccaggggcccaagtga

KEGG   Rattus norvegicus (rat): 291081
Entry
291081            CDS       T01003                                 

Gene name
Tubb2b
Definition
(RefSeq) tubulin beta-2B chain
  KO
K07375  tubulin beta
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04145  Phagosome
rno04540  Gap junction
rno05010  Alzheimer disease
rno05012  Parkinson disease
rno05014  Amyotrophic lateral sclerosis
rno05016  Huntington disease
rno05020  Prion disease
rno05022  Pathways of neurodegeneration - multiple diseases
rno05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    291081 (Tubb2b)
  09144 Cellular community - eukaryotes
   04540 Gap junction
    291081 (Tubb2b)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    291081 (Tubb2b)
  09164 Neurodegenerative disease
   05010 Alzheimer disease
    291081 (Tubb2b)
   05012 Parkinson disease
    291081 (Tubb2b)
   05014 Amyotrophic lateral sclerosis
    291081 (Tubb2b)
   05016 Huntington disease
    291081 (Tubb2b)
   05020 Prion disease
    291081 (Tubb2b)
   05022 Pathways of neurodegeneration - multiple diseases
    291081 (Tubb2b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    291081 (Tubb2b)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:rno04812]
    291081 (Tubb2b)
   04147 Exosome [BR:rno04147]
    291081 (Tubb2b)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Centrosome formation and ciliogenesis proteins
   Microtubules and associated factors
    Other tubulins
     291081 (Tubb2b)
Cytoskeleton proteins [BR:rno04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulins
    291081 (Tubb2b)
Exosome [BR:rno04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   291081 (Tubb2b)
  Exosomal proteins of colorectal cancer cells
   291081 (Tubb2b)
  Exosomal proteins of bladder cancer cells
   291081 (Tubb2b)
SSDB
Motif
Pfam: Tubulin Tubulin_C Misat_Tub_SegII Tubulin_3 Tubulin_2
Other DBs
NCBI-GeneID: 291081
NCBI-ProteinID: NP_001013908
RGD: 1309427
Ensembl: ENSRNOG00000017445
UniProt: Q3KRE8
Structure
PDB: 
5FNV

Position
17
AA seq 445 aa
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV
EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
EYQQYQDATADEQGEFEEEEGEDEA
NT seq 1338 nt   +upstreamnt  +downstreamnt
atgcgagagatcgtgcacattcaggcgggccagtgcggcaaccagatcggtgccaagttt
tgggaggtcatcagtgatgagcatggtatcgatcccactggaagttaccatggagacagt
gatttgcaactggaaagaatcaatgtatactacaacgaagcaactggtaataaatatgtg
cctcgggccatcctggtggacctggagcctggcaccatggactctgtcagatccggacca
tttgggcagatcttcaggccagacaacttcgtgttcggccagagtggtgcaggaaataac
tgggcaaagggccactacacagagggtgccgagctggtggactctgtcctggacgtggta
aggaaggagtcagaaagctgtgactgtctccagggcttccagctgacccactcactgggg
ggaggcactggctcaggcatggggaccctgctcatcagcaagatcagagaagagtaccca
gaccgcatcatgaacaccttcagcgtcatgccctcacccaaggtctctgacactgtggtg
gagccctataatgccaccctctccgtgcaccagctggtagagaacacagatgaaacctac
tgcatcgacaatgaggctctgtatgacatctgcttccgcaccctgaagctgaccacaccc
acctatggcgatctcaaccacctggtgtcagccaccatgagtggagtgaccacctgcctg
cgcttccctggccagctgaacgcagacctgcgcaagctggctgtgaacatggtgcctttc
ccacgcctgcacttcttcatgccaggcttcgcacctctgaccagcaggggcagccagcag
taccgagccctgacagtgcccgagctcacccagcagatgttcgactccaagaacatgatg
gctgcctgcgacccacgccatggccgctacctgaccgtagccgccattttccggggccgc
atgtccatgaaggaggtggatgagcagatgctcaacgtgcagaacaagaacagcagctac
ttcgtggagtggatccccaacaatgtgaagacggccgtgtgtgacatccctcctcgtggc
ctcaagatgtcagccaccttcattggcaacagcaccgccatccaggagctgttcaagcgc
atctcggagcagttcactgccatgttcaggcgcaaggctttcctgcactggtacacgggc
gagggcatggacgagatggagttcaccgaggcggagagcaacatgaatgacctggtgtct
gagtaccagcagtaccaggatgccacggctgatgagcagggcgagttcgaggaggaggag
ggcgaggatgaggcttga

KEGG   Rattus norvegicus (rat): 29213
Entry
29213             CDS       T01003                                 

Gene name
Tubb4a
Definition
(RefSeq) tubulin beta-4A chain
  KO
K07375  tubulin beta
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04145  Phagosome
rno04540  Gap junction
rno05010  Alzheimer disease
rno05012  Parkinson disease
rno05014  Amyotrophic lateral sclerosis
rno05016  Huntington disease
rno05020  Prion disease
rno05022  Pathways of neurodegeneration - multiple diseases
rno05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    29213 (Tubb4a)
  09144 Cellular community - eukaryotes
   04540 Gap junction
    29213 (Tubb4a)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    29213 (Tubb4a)
  09164 Neurodegenerative disease
   05010 Alzheimer disease
    29213 (Tubb4a)
   05012 Parkinson disease
    29213 (Tubb4a)
   05014 Amyotrophic lateral sclerosis
    29213 (Tubb4a)
   05016 Huntington disease
    29213 (Tubb4a)
   05020 Prion disease
    29213 (Tubb4a)
   05022 Pathways of neurodegeneration - multiple diseases
    29213 (Tubb4a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    29213 (Tubb4a)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:rno04812]
    29213 (Tubb4a)
   04147 Exosome [BR:rno04147]
    29213 (Tubb4a)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Centrosome formation and ciliogenesis proteins
   Microtubules and associated factors
    Other tubulins
     29213 (Tubb4a)
Cytoskeleton proteins [BR:rno04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulins
    29213 (Tubb4a)
Exosome [BR:rno04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   29213 (Tubb4a)
  Exosomal proteins of colorectal cancer cells
   29213 (Tubb4a)
  Exosomal proteins of bladder cancer cells
   29213 (Tubb4a)
SSDB
Motif
Pfam: Tubulin Tubulin_C Misat_Tub_SegII Tubulin_3 Tubulin_2
Other DBs
NCBI-GeneID: 29213
NCBI-ProteinID: NP_543158
RGD: 619730
Ensembl: ENSRNOG00000047505
UniProt: B4F7C2
Position
9
AA seq 444 aa
MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV
PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV
RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV
EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRG
LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
EYQQYQDATAEEGEFEEEAEEEVA
NT seq 1335 nt   +upstreamnt  +downstreamnt
atgcgggaaatcgtgcacctgcaagccgggcaatgcggcaaccagatcggggccaagttc
tgggaggtcatcagtgatgagcatggcatcgaccccactgggacctatcatggggacagt
gacctccagctggagagaattaatgtctactacaacgaggccacaggtggaaattatgtt
cccagagccgtgctggttgacctagaacctggcaccatggactccgtccgctctggccct
tttggccagatcttccggccagacaactttgtgtttggtcaatctggagcaggcaacaac
tgggccaagggtcattacactgagggcgcagagttagtggatgcagtcctggacgtggtg
cgcaaagaggctgaaagctgcgactgtctccagggcttccagctcacccactcgctcgga
ggtggcacaggctcagggatggggaccttgctcatcagcaagatccgggaggagttccca
gacaggatcatgaatacgttcagcgtagtgccatcgcccaaggtgtctgacacggtggtg
gaaccctacaatgccacactgtctgtgcatcaactggtggagaacactgatgagacctac
tgtatcgacaatgaggccttgtacgacatctgcttccgcactctcaagctgaccacgccc
acctacggggacctcaaccacctagtgtcggccaccatgagtggggtgaccacctgcctg
cgctttcccggccagctcaatgcagatctacgcaagctggctgtgaacatggtgccgttc
ccccgtctccacttcttcatgccaggattcgcacccttgaccagcaggggcagccagcag
taccgagccctcaccgttcctgagctgacccaacagatgttcgatgctaagaacatgatg
gccgcgtgcgacccgagacacggtcgctacctgaccgtggctgctgtcttccgaggacgg
atgtccatgaaggaggtggacgagcagatgctaagtgtgcagagcaagaacagcagctac
ttcgttgagtggatccccaacaacgtcaagacagccgtgtgtgacatcccaccccgaggc
ctgaagatggcagccaccttcatcggcaatagcacagccatccaggagctgttcaaacgc
atctcagagcagttcaccgccatgtttaggcgcaaggccttcctgcattggtacacgggt
gaaggcatggacgagatggagtttacggaagcagagagcaatatgaacgacctggtgtcc
gagtaccagcagtatcaggatgccacggctgaagagggcgagttcgaagaggaggccgaa
gaggaggtggcttaa

KEGG   Rattus norvegicus (rat): 29214
Entry
29214             CDS       T01003                                 

Gene name
Tubb5
Definition
(RefSeq) tubulin beta-5 chain
  KO
K07375  tubulin beta
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04145  Phagosome
rno04540  Gap junction
rno05010  Alzheimer disease
rno05012  Parkinson disease
rno05014  Amyotrophic lateral sclerosis
rno05016  Huntington disease
rno05020  Prion disease
rno05022  Pathways of neurodegeneration - multiple diseases
rno05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    29214 (Tubb5)
  09144 Cellular community - eukaryotes
   04540 Gap junction
    29214 (Tubb5)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    29214 (Tubb5)
  09164 Neurodegenerative disease
   05010 Alzheimer disease
    29214 (Tubb5)
   05012 Parkinson disease
    29214 (Tubb5)
   05014 Amyotrophic lateral sclerosis
    29214 (Tubb5)
   05016 Huntington disease
    29214 (Tubb5)
   05020 Prion disease
    29214 (Tubb5)
   05022 Pathways of neurodegeneration - multiple diseases
    29214 (Tubb5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    29214 (Tubb5)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:rno04812]
    29214 (Tubb5)
   04147 Exosome [BR:rno04147]
    29214 (Tubb5)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Centrosome formation and ciliogenesis proteins
   Microtubules and associated factors
    Other tubulins
     29214 (Tubb5)
Cytoskeleton proteins [BR:rno04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulins
    29214 (Tubb5)
Exosome [BR:rno04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   29214 (Tubb5)
  Exosomal proteins of colorectal cancer cells
   29214 (Tubb5)
  Exosomal proteins of bladder cancer cells
   29214 (Tubb5)
SSDB
Motif
Pfam: Tubulin Tubulin_C Misat_Tub_SegII Tubulin_3 Tubulin_2
Other DBs
NCBI-GeneID: 29214
NCBI-ProteinID: NP_775125
RGD: 628596
Ensembl: ENSRNOG00000061216
Vega: OTTRNOG00000001525
UniProt: P69897
Position
20
AA seq 444 aa
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV
EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM
AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
LKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
EYQQYQDATAEEEEDFGEEAEEEA
NT seq 1335 nt   +upstreamnt  +downstreamnt
atgagggaaatcgtgcacatccaggccggacagtgtggcaaccagatcggtgctaagttc
tgggaggtgataagcgatgaacacggcatcgaccccaccggcacctaccacggagacagc
gacttgcagctggaccgaatctctgtgtactacaatgaagctacaggtggcaagtatgtc
cctcgagctatcttagtggatctagaacccgggactatggactccgttcgctcaggtcct
tttggccagatcttcagaccggacaactttgtttttggtcagtctggggcaggcaacaac
tgggctaagggtcactacacagagggagctgagctggttgactctgtcttggatgtggtg
cggaaggaggcggagagctgtgactgcctgcaaggctttcagctgacccattcgctgggt
ggaggcacgggctctggcatgggcaccctgctcatcagcaagattcgagaagaatacccc
gaccgcatcatgaacacctttagcgtggtgccctcacccaaagtgtctgacaccgtggtt
gagccctacaacgccaccctgtccgtccaccagttggtagagaacacagatgagacctac
tgcattgacaacgaggccctctacgacatctgcttccgtacccttaagctcaccacgcca
acctacggagacctgaaccatctcgtctctgccaccatgagcggtgtcaccacctgcctc
cgtttcccgggccagctgaacgccgaccttcggaagctggctgtcaacatggtgcccttc
ccgcgtctccacttctttatgcctggctttgcccctctcaccagccgtggaagccagcag
taccgggccctcactgtgcctgaactcacccagcaggtcttcgacgccaagaacatgatg
gccgcctgtgacccacgccacggccggtacctcacggttgcggctgtcttccgtggacgg
atgtccatgaaggaggtagatgagcaaatgctcaacgtgcagaataagaatagcagctac
ttcgtggaatggatccccaacaacgtcaagacggctgtctgtgacatcccaccgcgaggc
ctcaagatggcagtcaccttcatcggaaacagcacggccatccaggagctcttcaagcgc
atctctgagcagtttacggcaatgttccgtcggaaggctttcctccactggtacacgggt
gagggcatggacgagatggagttcaccgaagctgagagcaacatgaatgacctcgtctct
gagtatcagcagtaccaggacgccaccgcagaagaggaagaggatttcggagaggaggca
gaagaagaggcctaa

KEGG   Rattus norvegicus (rat): 296554
Entry
296554            CDS       T01003                                 

Gene name
Tubb4b
Definition
(RefSeq) tubulin beta-4B chain
  KO
K07375  tubulin beta
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04145  Phagosome
rno04540  Gap junction
rno05010  Alzheimer disease
rno05012  Parkinson disease
rno05014  Amyotrophic lateral sclerosis
rno05016  Huntington disease
rno05020  Prion disease
rno05022  Pathways of neurodegeneration - multiple diseases
rno05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    296554 (Tubb4b)
  09144 Cellular community - eukaryotes
   04540 Gap junction
    296554 (Tubb4b)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    296554 (Tubb4b)
  09164 Neurodegenerative disease
   05010 Alzheimer disease
    296554 (Tubb4b)
   05012 Parkinson disease
    296554 (Tubb4b)
   05014 Amyotrophic lateral sclerosis
    296554 (Tubb4b)
   05016 Huntington disease
    296554 (Tubb4b)
   05020 Prion disease
    296554 (Tubb4b)
   05022 Pathways of neurodegeneration - multiple diseases
    296554 (Tubb4b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    296554 (Tubb4b)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:rno04812]
    296554 (Tubb4b)
   04147 Exosome [BR:rno04147]
    296554 (Tubb4b)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Centrosome formation and ciliogenesis proteins
   Microtubules and associated factors
    Other tubulins
     296554 (Tubb4b)
Cytoskeleton proteins [BR:rno04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulins
    296554 (Tubb4b)
Exosome [BR:rno04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   296554 (Tubb4b)
  Exosomal proteins of colorectal cancer cells
   296554 (Tubb4b)
  Exosomal proteins of bladder cancer cells
   296554 (Tubb4b)
SSDB
Motif
Pfam: Tubulin Tubulin_C Misat_Tub_SegII Tubulin_3 Tubulin_2
Other DBs
NCBI-GeneID: 296554
NCBI-ProteinID: NP_954525
RGD: 735101
Ensembl: ENSRNOG00000010170
UniProt: Q6P9T8
Position
3
AA seq 445 aa
MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV
PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV
EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTACL
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
EYQQYQDATAEEEGEFEEEAEEEVA
NT seq 1338 nt   +upstreamnt  +downstreamnt
atgagggagatcgtgcacctgcaggctgggcagtgcggcaaccagattggcgccaagttc
tgggaggtaatcagcgacgagcatggcattgatcccactggcacgtaccacggagatagc
gacctccagctggagcgcatcaacgtgtactacaacgaggccaccggtggcaagtatgtg
ccccgcgctgtgctcgtggacttggagcccggcaccatggactcggtgcgctcagggccc
ttcgggcagatcttcagacctgataacttcgtttttggtcagagtggggctgggaacaac
tgggccaaggggcactacacagaaggtgcagagctggttgactcggtgttggacgttgtg
aggaaggaagctgagagctgtgactgcctgcaaggcttccagctgacccactccctgggt
ggggggactgggtctgggatgggtaccctccttatcagcaagatccgggaggagtaccca
gacagaatcatgaacaccttcagtgtggtcccttcccccaaggtgtcggacacagtggtt
gagccctacaatgccaccctttcagtccaccagcttgttgaaaacacagatgagacctat
tgtattgataatgaagcactctatgacatctgcttcagaaccctaaagctgaccacaccc
acttatggtgacctgaaccatctagtgtccgccaccatgagtggggtaaccgcttgccta
cgattccctggccagctaaatgctgacctgcggaaactggctgtaaatatggtgcccttc
cctcgcctgcacttcttcatgcctggctttgcccccttgaccagccggggaagccagcag
taccgagccctgacagttcctgagctcacccagcagatgtttgatgctaagaacatgatg
gctgcctgtgatccccgccatgggcgctacttgacagtggctgccgtgttcaggggccgc
atgtctatgaaggaggtggacgaacagatgcttaatgtccaaaacaagaacagcagctac
tttgttgagtggatccccaacaacgtgaaaacagctgtctgtgacattccacctcggggc
ctaaaaatgtccgccaccttcattggcaacagcacggctattcaggagctgttcaaacgc
atctcagagcagttcacagccatgttccgacgcaaggccttcctacactggtacacgggc
gagggcatggatgagatggagttcactgaggctgagagcaacatgaatgacctggtgtcc
gagtaccagcagtaccaggatgctacagctgaggaggaaggagagtttgaggaggaggct
gaggaggaggtggcttag

KEGG   Rattus norvegicus (rat): 307351
Entry
307351            CDS       T01003                                 

Gene name
Tubb6
Definition
(RefSeq) tubulin beta-6 chain
  KO
K07375  tubulin beta
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04145  Phagosome
rno04540  Gap junction
rno05010  Alzheimer disease
rno05012  Parkinson disease
rno05014  Amyotrophic lateral sclerosis
rno05016  Huntington disease
rno05020  Prion disease
rno05022  Pathways of neurodegeneration - multiple diseases
rno05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    307351 (Tubb6)
  09144 Cellular community - eukaryotes
   04540 Gap junction
    307351 (Tubb6)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    307351 (Tubb6)
  09164 Neurodegenerative disease
   05010 Alzheimer disease
    307351 (Tubb6)
   05012 Parkinson disease
    307351 (Tubb6)
   05014 Amyotrophic lateral sclerosis
    307351 (Tubb6)
   05016 Huntington disease
    307351 (Tubb6)
   05020 Prion disease
    307351 (Tubb6)
   05022 Pathways of neurodegeneration - multiple diseases
    307351 (Tubb6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    307351 (Tubb6)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:rno04812]
    307351 (Tubb6)
   04147 Exosome [BR:rno04147]
    307351 (Tubb6)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Centrosome formation and ciliogenesis proteins
   Microtubules and associated factors
    Other tubulins
     307351 (Tubb6)
Cytoskeleton proteins [BR:rno04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulins
    307351 (Tubb6)
Exosome [BR:rno04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   307351 (Tubb6)
  Exosomal proteins of colorectal cancer cells
   307351 (Tubb6)
  Exosomal proteins of bladder cancer cells
   307351 (Tubb6)
SSDB
Motif
Pfam: Tubulin Tubulin_C Misat_Tub_SegII Tubulin_3 Tubulin_2
Other DBs
NCBI-GeneID: 307351
NCBI-ProteinID: NP_001020846
RGD: 1305887
Ensembl: ENSRNOG00000018371
UniProt: Q4QQV0
Position
18
AA seq 447 aa
MREIVHIQAGQCGNQIGTKFWEVISDEHGIDPAGGYVGDSALQLERISVYYNESSSKKYV
PRAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQTGAGNNWAKGHYTEGAELVDSVLDVV
RKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV
EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTSL
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMM
AACDPRHGRYLTVATVFRGPMSMKEVDEQMLAIQNKNSSYFVEWIPNNVKVAVCDIPPRG
LKMASTFIGNSTAIQELFKRISEQFSAMFRRKAFLHWFTGEGMDEMEFTEAESNMNDLVS
EYQQYQDATVNDGEEAFEDEDEEEINE
NT seq 1344 nt   +upstreamnt  +downstreamnt
atgagggagattgtgcacatccaggcgggccagtgtgggaaccagatcggtaccaagttt
tgggaagtgatcagcgatgagcacggcatcgacccggccggaggctacgtgggcgactcg
gcgctgcagctggagaggatcagcgtctactacaatgagtcatcctctaagaagtacgta
cccagggctgccctggtggacttggagcccggcaccatggacagcgtgaggtctgggcct
tttgggcagctcttccggcctgacaacttcatcttcggacagacgggtgccgggaacaac
tgggccaagggccactacacggagggcgcggagctggtggactcggtgctggatgtggtg
cgcaaggagtgtgagcactgcgactgcctgcagggcttccagctcactcactcgctgggc
ggtggcacgggctcgggcatgggcacgctgctcatcagcaagatccgagaggagtaccca
gaccgcatcatgaacaccttcagcgtcatgccgtctcccaaggtctcagacaccgtggtg
gaaccctacaatgccacactgtcggtgcaccagctggtggagaacaccgatgagacctac
tgcatcgacaatgaggccctctacgacatctgcttccgcacgctcaagctgaccacaccc
acttacggggacctcaaccacttggtatctgctaccatgagtggtgtcaccacatcactg
cgtttccctggccaactcaatgccgacctgcgcaagctggctgtgaacatggtgcccttc
ccgcgcctgcatttcttcatgcccggattcgccccgctcacagcccggggtagtcagcag
taccgtgccctgacagtgcctgagctcacacagcagatgttcgatgccaagaacatgatg
gctgcctgtgacccacgccatggccgctacctgaccgtcgccactgtcttccggggcccc
atgtccatgaaggaggtggacgagcagatgctggccatccagaacaagaacagcagctac
tttgtggagtggattcccaacaacgtgaaggtagccgtgtgtgacatcccaccacggggc
ctgaagatggcctccaccttcataggcaatagcactgccatccaggagctattcaagcgc
atctcagagcagttctcagccatgttccgccgcaaggccttcctgcactggttcaccggc
gagggcatggatgagatggagttcaccgaggccgagagcaacatgaatgacctggtgtcc
gagtaccagcagtaccaggacgccacagtcaacgatggggaagaggcttttgaagatgag
gatgaagaagagatcaacgaatag

KEGG   Rattus norvegicus (rat): 498736
Entry
498736            CDS       T01003                                 

Gene name
Tubb2a
Definition
(RefSeq) tubulin beta-2A chain
  KO
K07375  tubulin beta
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04145  Phagosome
rno04540  Gap junction
rno05010  Alzheimer disease
rno05012  Parkinson disease
rno05014  Amyotrophic lateral sclerosis
rno05016  Huntington disease
rno05020  Prion disease
rno05022  Pathways of neurodegeneration - multiple diseases
rno05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    498736 (Tubb2a)
  09144 Cellular community - eukaryotes
   04540 Gap junction
    498736 (Tubb2a)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    498736 (Tubb2a)
  09164 Neurodegenerative disease
   05010 Alzheimer disease
    498736 (Tubb2a)
   05012 Parkinson disease
    498736 (Tubb2a)
   05014 Amyotrophic lateral sclerosis
    498736 (Tubb2a)
   05016 Huntington disease
    498736 (Tubb2a)
   05020 Prion disease
    498736 (Tubb2a)
   05022 Pathways of neurodegeneration - multiple diseases
    498736 (Tubb2a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    498736 (Tubb2a)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:rno04812]
    498736 (Tubb2a)
   04147 Exosome [BR:rno04147]
    498736 (Tubb2a)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Centrosome formation and ciliogenesis proteins
   Microtubules and associated factors
    Other tubulins
     498736 (Tubb2a)
Cytoskeleton proteins [BR:rno04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulins
    498736 (Tubb2a)
Exosome [BR:rno04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   498736 (Tubb2a)
  Exosomal proteins of colorectal cancer cells
   498736 (Tubb2a)
  Exosomal proteins of bladder cancer cells
   498736 (Tubb2a)
SSDB
Motif
Pfam: Tubulin Tubulin_C Misat_Tub_SegII Tubulin_3 Tubulin_2
Other DBs
NCBI-GeneID: 498736
NCBI-ProteinID: NP_001102589
RGD: 1588452
Ensembl: ENSRNOG00000017558
UniProt: P85108
Structure
PDB: 
5FNV

Position
17
AA seq 445 aa
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV
EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
EYQQYQDATADEQGEFEEEEGEDEA
NT seq 1338 nt   +upstreamnt  +downstreamnt
atgcgcgagatcgtgcacatccaggcgggccaatgcggcaaccagatcggcgctaagttt
tgggaggtgataagcgatgagcatggcatcgaccccactggcagttaccatggcgacagt
gacttgcagctggagagaatcaatgtgtactacaatgaagctgctggcaacaaatatgta
cctcgggccatcctagtggacctggagccaggcaccatggactcagtgaggtcgggacca
ttcggccagatcttcaggccagacaactttgtgttcggtcagagtggtgcaggaaataac
tgggcaaagggccactacacagagggtgccgagctggtggactctgtcctggatgtggtg
aggaaggagtcagaaagctgtgactgtctccagggcttccagctgacccactcactgggg
ggaggcactggctcaggcatggggaccctgctcatcagcaagatcagagaagagtaccca
gaccgcatcatgaacaccttcagcgtcatgccctcacccaaggtctctgacactgtggtg
gagccctataatgccaccctctccgtgcaccagctggtagagaacacagatgaaacctat
tccattgacaatgaggctctgtatgacatctgcttccgcaccctgaagctgaccacgccc
acctatggcgatctcaaccacctggtgtcagccaccatgagtggagtgaccacctgcctg
cgcttccctggccagctgaacgcagacctgcgcaagctggctgtgaacatggtgcccttc
ccgcgcctgcacttcttcatgccaggcttcgcacctctgaccagcaggggcagccagcag
taccgagccctgacagtgcccgagctcacccagcagatgttcgactccaagaacatgatg
gctgcctgcgacccacgccatggccgctacctgaccgtagccgccattttccggggccgc
atgtccatgaaggaggtggatgagcagatgctcaacgtgcagaacaagaacagcagctac
ttcgtggagtggatccccaacaatgtgaagacggccgtgtgtgacatccctcctcgtggc
ctcaagatgtcagccaccttcattggcaacagcaccgccatccaggagctgttcaagcgc
atctcggagcagttcactgccatgttcaggcgcaaggctttcctgcactggtacacgggc
gagggcatggacgagatggagttcaccgaggcagagagcaacatgaatgacctggtgtct
gagtaccagcagtaccaggatgccacggctgatgagcagggcgagttcgaggaggaggag
ggcgaggatgaggcttaa

KEGG   Rattus norvegicus (rat): 679312
Entry
679312            CDS       T01003                                 

Gene name
Tubb1
Definition
(RefSeq) tubulin beta-1 chain isoform X1
  KO
K07375  tubulin beta
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04145  Phagosome
rno04540  Gap junction
rno05010  Alzheimer disease
rno05012  Parkinson disease
rno05014  Amyotrophic lateral sclerosis
rno05016  Huntington disease
rno05020  Prion disease
rno05022  Pathways of neurodegeneration - multiple diseases
rno05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    679312 (Tubb1)
  09144 Cellular community - eukaryotes
   04540 Gap junction
    679312 (Tubb1)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    679312 (Tubb1)
  09164 Neurodegenerative disease
   05010 Alzheimer disease
    679312 (Tubb1)
   05012 Parkinson disease
    679312 (Tubb1)
   05014 Amyotrophic lateral sclerosis
    679312 (Tubb1)
   05016 Huntington disease
    679312 (Tubb1)
   05020 Prion disease
    679312 (Tubb1)
   05022 Pathways of neurodegeneration - multiple diseases
    679312 (Tubb1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    679312 (Tubb1)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:rno04812]
    679312 (Tubb1)
   04147 Exosome [BR:rno04147]
    679312 (Tubb1)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Centrosome formation and ciliogenesis proteins
   Microtubules and associated factors
    Other tubulins
     679312 (Tubb1)
Cytoskeleton proteins [BR:rno04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulins
    679312 (Tubb1)
Exosome [BR:rno04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   679312 (Tubb1)
  Exosomal proteins of colorectal cancer cells
   679312 (Tubb1)
  Exosomal proteins of bladder cancer cells
   679312 (Tubb1)
SSDB
Motif
Pfam: Tubulin Tubulin_C Misat_Tub_SegII Tubulin_2 Tubulin_3
Other DBs
NCBI-GeneID: 679312
NCBI-ProteinID: XP_003749686
RGD: 1589557
Ensembl: ENSRNOG00000046151
UniProt: M0R8B6
Position
3
AA seq 452 aa
MREIVHIQIGQCGNQIGAKFWEVIGEEHGIDCAGSYCGTSALQLERISVYYNEAYGKKYV
PRAVLVDLEPGTMDSIRSSRLGILFQPDSFVHGNSGAGNNWAKGHYTEGAELIETVMDVV
RRESESCDCLQGFQIVHSLGGGTGSGMGTLLMNKIREEYPDRILNSFSVMPSPKVSDTVV
EPYNAVLSIHQLIENTDACFCIDNEALYDICFRTLRLTTPTYGDLNHLVSLTMSGITTSL
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTAQGSQQYRALSVAELTQQMFDARNIM
AACDPRRGRYLTVACIFRGKMSTKEVDQQLLSIQTRNSNCFVEWIPNNVKVAVCDIPPRG
LNMAATFLGNNTAIQELFTRVSEHFSAMFRRRAFVHWYTSEGMDISEFGEAEADILDLVS
EYQQFQDVRAGLEDIEEGGEEEAEMGAEDKNH
NT seq 1359 nt   +upstreamnt  +downstreamnt
atgcgggaaatcgtgcacattcagattggccagtgtggcaaccagatcggagccaagttc
tgggaggtgatcggggaagaacatgggattgactgcgctgggagctactgcgggacttca
gcccttcagctggagagaatcagcgtttactacaacgaagcctacggtaagaagtacgtg
ccccgagctgtccttgtggacctggaacctgggacaatggacagcatccgatccagcaga
ttgggaatcctctttcagcctgacagttttgttcacggtaactctggtgctggtaacaat
tgggccaagggccactacacagagggagcggagctgatcgagacggtcatggatgtggtg
aggagagagagcgagagctgcgactgcctgcaaggtttccagatcgtgcactctctgggt
ggaggcacaggctcaggcatgggcaccctgctcatgaacaagatcagggaggagtacccg
gatcggatccttaattcctttagcgtcatgccgtcccccaaggtgtcagacaccgtggta
gagccctacaacgcggtgctctccatccaccagctgatagagaacacagatgcctgcttc
tgcatcgacaacgaagcactctacgatatctgtttccgcaccctgaggctgaccacgccc
acttacggggacctcaaccacctggtgtccttgaccatgagtgggatcacgacctcactg
cgttttccgggccagcttaatgcagacctgcgcaagctggcagtgaatatggtgcccttt
cctcgtcttcacttcttcatgcctggcttcgctccactcacagcccagggtagccagcag
taccgagccctctcagtggcggagctcacccaacagatgttcgatgcccgcaacatcatg
gctgcctgtgatcctcgccgtggccgctacctgactgtggcttgtatcttccggggtaag
atgtccaccaaggaagtggatcaacagctgctgtccattcagacaaggaacagcaactgc
tttgtggaatggatccccaacaatgtcaaggtagctgtgtgtgacatcccaccccgggga
ctgaacatggcggctaccttcctgggtaacaatacagccattcaagagctcttcacccgg
gtctctgagcacttctcagccatgttcaggaggagagcttttgtgcactggtacaccagt
gaagggatggacataagtgagtttggggaagcggaggcagacatcctcgacctggtgtcc
gagtaccaacaattccaagatgtccgagcagggctagaggacatcgaagagggtggggag
gaggaggcagagatgggggcagaagacaaaaaccattag

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