KEGG   Rattus norvegicus (rat): 24988
Entry
24988             CDS       T01003                                 
Symbol
RT1-M2
Name
(RefSeq) RT1 class Ib, locus M2 precursor
  KO
K06751  MHC class I antigen
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04144  Endocytosis
rno04145  Phagosome
rno04218  Cellular senescence
rno04514  Cell adhesion molecules
rno04612  Antigen processing and presentation
rno04940  Type I diabetes mellitus
rno05163  Human cytomegalovirus infection
rno05165  Human papillomavirus infection
rno05166  Human T-cell leukemia virus 1 infection
rno05167  Kaposi sarcoma-associated herpesvirus infection
rno05168  Herpes simplex virus 1 infection
rno05169  Epstein-Barr virus infection
rno05170  Human immunodeficiency virus 1 infection
rno05203  Viral carcinogenesis
rno05320  Autoimmune thyroid disease
rno05330  Allograft rejection
rno05332  Graft-versus-host disease
rno05416  Viral myocarditis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    24988 (RT1-M2)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    24988 (RT1-M2)
   04145 Phagosome
    24988 (RT1-M2)
  09143 Cell growth and death
   04218 Cellular senescence
    24988 (RT1-M2)
 09150 Organismal Systems
  09151 Immune system
   04650 Natural killer cell mediated cytotoxicity
    24988 (RT1-M2)
   04612 Antigen processing and presentation
    24988 (RT1-M2)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    24988 (RT1-M2)
  09172 Infectious disease: viral
   05166 Human T-cell leukemia virus 1 infection
    24988 (RT1-M2)
   05170 Human immunodeficiency virus 1 infection
    24988 (RT1-M2)
   05168 Herpes simplex virus 1 infection
    24988 (RT1-M2)
   05163 Human cytomegalovirus infection
    24988 (RT1-M2)
   05167 Kaposi sarcoma-associated herpesvirus infection
    24988 (RT1-M2)
   05169 Epstein-Barr virus infection
    24988 (RT1-M2)
   05165 Human papillomavirus infection
    24988 (RT1-M2)
  09163 Immune disease
   05320 Autoimmune thyroid disease
    24988 (RT1-M2)
   05330 Allograft rejection
    24988 (RT1-M2)
   05332 Graft-versus-host disease
    24988 (RT1-M2)
  09166 Cardiovascular disease
   05416 Viral myocarditis
    24988 (RT1-M2)
  09167 Endocrine and metabolic disease
   04940 Type I diabetes mellitus
    24988 (RT1-M2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:rno04147]
    24988 (RT1-M2)
   00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:rno00537]
    24988 (RT1-M2)
Exosome [BR:rno04147]
 Exosomal proteins
  Proteins found in most exosomes
   24988 (RT1-M2)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:rno00537]
 Antigens
  24988 (RT1-M2)
SSDB
Motif
Pfam: MHC_I C1-set Ig_3 ig C2-set_2 DUF3574
Other DBs
NCBI-GeneID: 24988
NCBI-ProteinID: NP_001001717
RGD: 3493
Ensembl: ENSRNOG00000049590
Vega: OTTRNOG00000001421
UniProt: Q6W9J5
Position
20:984174..986762
AA seq 344 aa
METSAILTLHLLLSASLALTQSFKGSHSLRYFDIAVSRPGLEETHYMTLGYVDDTEFVHF
NNEAVNPRFEPRVPWMEQMGQKYWDDQTRIAKVAEQQIRVYFQKLRGYYNQSQNSSHTIQ
RMTGCYIGPDGHLLHAYRQFGYDGQDYLTLNEDLSTWTAADSAAEITHREWKATNEAEFW
RVYLEGPCMVWLFKYLTVGNETLLRADPPKVYVTHHPRPEGDITLRCWALGFYPSDITLI
WQRDGEDLTQDMDVIETRPAGDGTFQKWAAVVVPSGKEQNYTCYVEHEGLPEPLTLRWSR
PPQSFIPTIVVAVGLVLLGASVVTLVIWKKSSGGGRGSLRFLSN
NT seq 1035 nt   +upstreamnt  +downstreamnt
atggagacttcagcaatcctcactctccacctgctgctgagcgcttctttggccctgacc
cagtcctttaaaggctcccactccttgcggtactttgacatcgcagtgtcaaggcctggc
ctagaggagacccactacatgactcttggctacgtggatgacacagagtttgtgcatttc
aacaatgaggcagtgaatccgaggtttgagccccgggtgccctggatggaacagatggga
cagaagtactgggatgaccagacacgaattgccaaagtcgcggaacagcagattagagtg
tactttcagaaactgcgaggctactacaaccagagccagaacagttctcacaccatccaa
aggatgactggctgctacattggaccagacggacacctacttcacgcataccgtcagttt
ggatatgatggacaagattacctcactttgaatgaagatctgagcacctggactgcggca
gattcggcagctgagatcacccatagagagtggaaggcaactaatgaagctgagttctgg
agggtctacttggagggcccttgcatggtgtggctctttaaatacctgacagtgggaaat
gagactctactgcgcgcagatccccccaaagtatatgtgacccatcaccccagacctgaa
ggtgatatcaccctgaggtgctgggccctgggcttctacccttctgacatcaccctgatc
tggcaaagagatggagaggacctgacccaggacatggacgtaattgagaccagacctgca
ggggatggaaccttccagaagtgggcagctgtggtggtgccttcggggaaggagcagaat
tatacatgctatgtagaacatgaggggctgcctgaacccctcaccctgagatggagtaga
cctcctcagtcgttcattcccacaatagtggttgctgttggcctggttctcctgggagct
tctgtggttacacttgtcatttggaagaagagctcaggtggtggaaggggtagcctgaga
tttctttccaactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (18)   
   KEGG PATHWAY (18)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
   VEGA (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (38)   

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