KEGG   Rattus norvegicus (rat): 252855
Entry
252855            CDS       T01003                                 
Symbol
Sfpq
Name
(RefSeq) splicing factor, proline- and glutamine-rich
  KO
K13219  splicing factor, proline- and glutamine-rich
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:rno01009]
    252855 (Sfpq)
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    252855 (Sfpq)
   03041 Spliceosome [BR:rno03041]
    252855 (Sfpq)
Protein phosphatases and associated proteins [BR:rno01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     252855 (Sfpq)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     252855 (Sfpq)
Spliceosome [BR:rno03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   Other SAPs
    252855 (Sfpq)
SSDB
Motif
Pfam: RRM_1 NOPS RRM_7
Other DBs
NCBI-GeneID: 252855
NCBI-ProteinID: NP_001020442
RGD: 727923
Ensembl: ENSRNOG00000058461
UniProt: Q4KM71
Position
5:144621678..144637930
AA seq 699 aa
MSRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGGPKPPLPP
PPPHQQQQQPPPQQPPPQQPPPHQQPPPHQPPHQQPPPPPQESKPVVPQGPGSAPGVSTA
PPPAVSAPPANPPTTGAPPGPGPTPTPPPAVPSTAPGPPPPSTPSSGVSTTPPQTGGPPP
PPAGGAGPGPKQGPGPGGPKGGKMPGGPKPGGGPGMGAPGGHPKPPHRGGGEPRGGRQHH
APYHQQHHQGPPPGGPGPRTEEKISDSEGFKANLSLLRRPGEKTYTQRCRLFVGNLPADI
TEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGRQLRVRFAT
HAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKAF
ERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRFAQHGTFEY
EYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLMRRQEELRR
MEELHSQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQREESYSRMGYMDPRER
DMRMGGGGTMNMGDPYGSGGQKFPPLGGGGGIGYEANPGVPPATMSGSMMGSDMRTERFG
QGGAGPVGGQGPRGMGPGTPAGYGRGREEYEGPNKKPRF
NT seq 2100 nt   +upstreamnt  +downstreamnt
atgtctcgggatcggttccggagccgcggtggtggtggtggaggctttcatcggcgtgga
ggaggcggtggccgcggcggcctccacgacttccgctctccgccgcctggcatgggcctc
aaccagaatcgcggccccatgggccccggccctggcggcccgaagccaccgctcccgcct
ccacctccgcaccagcagcagcagcaacctccgccgcagcagcccccgccgcagcagcct
ccaccgcaccagcagccgccgccacaccagccgccccatcaacagcccccgcctccgccg
caggaatccaagcccgtcgtcccgcaaggccccggctcggcgcccggagtgagcactgcg
ccgcctccggcggtctcggccccgcccgccaacccccctaccaccggcgccccgccgggc
ccgggtcctaccccgactccgccgcccgcagtcccctctactgcccccggaccgcctccc
ccttccacgccgagcagcggagtctcaacaacgcctccacagaccggtggccctccgcca
ccgcccgccgggggcgccggtccagggcctaagcaaggcccaggccctggcggtcccaaa
ggcggcaagatgccgggtgggcctaagcctggcggtggtccgggcatgggcgctcctggt
ggccacccgaagccacctcaccgaggtggcggggagccccgtgggggccggcagcaccac
gcgccctaccaccagcagcaccatcagggcccccctcccggcggcccgggacctcgcaca
gaggaaaagatatccgactcggagggatttaaagccaacttgtctctcttgcggaggcct
ggagaaaaaacttacacacagcgctgtcggttgtttgtggggaacctacctgctgatatc
acagaggatgaattcaaaagactgtttgctaaatacggagaaccgggagaagtttttatc
aacaagggcaaagggttcgggttcattaaacttgagtcaagagccttggctgaaattgcc
aaagctgaacttgatgatacccccatgagaggtagacagctacgggttcggtttgccaca
catgctgcagccctgtctgttcggaatctttctccttatgtatccaatgaacttttggaa
gaggcctttagccagtttggtcctattgaaagggctgttgtaattgtggatgatcgtgga
agatccacggggaaaggcattgttgaatttgcttcgaagccagcagcaagaaaagcattt
gaaagatgcagtgaaggtgttttcctactgacaacgactcctcgcccagtcattgtggaa
ccacttgagcagttagatgatgaagatggtcttcctgaaaaactggcccagaagaatcca
atgtatcaaaaggagagagaaacgcctcctcgttttgctcagcatggcacatttgagtat
gaatattctcaacgatggaagtctttggatgaaatggaaaaacagcaaagggaacaagtt
gaaaaaaacatgaaggatgcaaaagacaagttggaaagtgaaatggaagatgcctaccat
gaacaccaagcaaatcttttgcgccaagatctgatgagacgccaggaagaattaaggcgc
atggaggaacttcacagtcaagaaatgcagaaacgtaaagaaatgcagttgaggcaagag
gaggaacggcgtagaagagaggaagagatgatgattcgccaacgtgagatggaagaacaa
atgagacgccaacgagaagaaagctacagcaggatgggctacatggatccaagagaaaga
gacatgagaatgggtggtggtggaacaatgaacatgggagatccctatggttcaggaggc
cagaaatttccaccgctaggtggtggtggtggcataggttatgaagctaatcctggagtt
ccaccagcaaccatgagtggttccatgatgggaagcgacatgcgtactgagcgctttggg
cagggaggtgcgggtcctgtgggtggacagggtcctagaggaatggggcctggaacgcca
gcaggatatggtagagggagagaagagtatgaagggccaaataaaaaaccccgattttag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (14)   
   RefSeq(nuc) (4)   
   GenBank (5)   
   EMBL (5)   
Protein domain (3)   
   Pfam (3)   
All databases (31)   

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