KEGG   Rattus norvegicus (rat): 282546
Entry
282546            CDS       T01003                                 
Symbol
Arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B
  KO
K11653  AT-rich interactive domain-containing protein 1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03082  ATP-dependent chromatin remodeling
rno04714  Thermogenesis
rno05225  Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    282546 (Arid1b)
 09150 Organismal Systems
  09159 Environmental adaptation
   04714 Thermogenesis
    282546 (Arid1b)
 09160 Human Diseases
  09162 Cancer: specific types
   05225 Hepatocellular carcinoma
    282546 (Arid1b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    282546 (Arid1b)
   03021 Transcription machinery [BR:rno03021]
    282546 (Arid1b)
   03036 Chromosome and associated proteins [BR:rno03036]
    282546 (Arid1b)
Transcription factors [BR:rno03000]
 Eukaryotic type
  Helix-turn-helix
   ARID
    282546 (Arid1b)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     282546 (Arid1b)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    282546 (Arid1b)
SSDB
Motif
Pfam: BAF250_C ARID CCD97-like_C Merozoite_SPAM Zip Mat89Bb
Other DBs
NCBI-GeneID: 282546
NCBI-ProteinID: NP_001406731
RGD: 708504
Ensembl: ENSRNOG00000017030
Position
1:47973199..48328793
AA seq 2375 aa
MAARSAAAARARAGSCERRAPSGPRPAPGARDLETGARGAVAAAAPGPILGGGDGGLNNV
HHHPLHPRHDLNMAHSASAAAAASSNSAQSGGSEAALKEGGSAAALSSSAAVAASSSSAG
PGSAMETGLLPNHKLKAVGEAPAAPPHQQHHHHHAHHHHHHHAHHLHHHHHALQQQLNQF
QQPPQPQQQPPPPPPQQQQHPTANNSLGGAGGGAPQPGPDMEQPQHGGAKDSAAGSQADP
QGQPLLSKPGDEDDAPPKMGEPAGSRYEHPGLGAQQQPAPVAVPGGGGGGPAAVSEFNNY
YGSAASASGGPGGRAGPCFDQHGGQQSPGMGMMHSASAAAGAPSSMDPLQNSHEGYPNSQ
YNHYPGYSRPGAGGGGGGGGGGGGSGGGGGGGGAGGAGGAAAAAAAAGAGAVAAAAAAAA
AAAAGGGGGGGYGGSSSGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGAAAAAGGFQR
FAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPDYSSSSAPPPPSQPQSQAAAAAGAAA
GGQQAAAGMGLGKDLGAQYAAASPAWAAAQQRNHPAMSPGTPGPTMGRSQGSPMDPMVMK
RPQLYGMGTHPHSQPQQSSPYPGGAYGPPGAQRYPLGMQGRAPGALGGLQYPQQQMPPQY
GQQGVSGYCQQGQQPYYNQQPQPSHLPPQAQYLQPQSQQRYQPQQDMSQEGYGTRAQPPL
APGKSNHEDLNLIQQERPSSLPDLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQ
SPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSS
HPALSQSPMPQERGFMAGTQRNPQMSQYGPQQTGPSMSPHPSPGGQMHPGISNFQQSNSS
GTYGPQMSQYGPQGNYSRTPTYSGVPSASYSGPGPGMGINANNQMHGQGPTQPCGAMPLG
RMPSAGMQSRPFPGNMSSVPPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSA
QSRQGSFPGMNQSGLVASSSPYSQPMNNNSNLMGTQAQPYSMTPTMVNSSTASMGLTDMM
SPSESKLSVPLKADGKEEGVPQPESKSKDSYSSQGISQPPTPGNLPVPSPMSPSSASISS
FHGDESDSISSPGWPKTPSSPKSSSSSTTGEKITKVYELGTEPERKLWVDRYLTFMEERG
SPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQ
YIQYLFAFECKIERGEEPPPEVFSTGDAKKQPKLQPPSPANSGSLQGPQTPQSTGSSSMA
EVPGDLKPPTPASTPHGQGTPMQSGRSSTVSVHDPFSDVSDSAYPKRNSMTPNAPYQQGM
GMPDMMGRMPYEPNKDPFSGMRKVPGSSEPFMTQGQMPNSSMQDMYNQSPSGAMSNLGMG
QRQQFPYGTSYDRRHEAYGQQYPGQGPPTGQPPYGGHQPGLYPQQPNYKRHMDGMYGPPA
KRHEGDMYNMQYGSQQQEMYNQYGGSYSGPDRRPIQGQYPYPYNRERMQGPGQMQPHGIP
PQMMGGPMQSSSNEGPQQNMWATRNDMPYPYQNRQGPGGPAQAPPYPGMNRTDDMMVPDQ
RINHESQWPSHVSQRQPYMSSSASMQPITRPPQSSYQTPPSLPNHISRAPSPASFPRSLE
SRMSPSKSPFLPAMKMQKVMPTVPTSQVTGPPPQPPPIRREITFPPGSVEASQPVLKQRR
KITSKDIVTPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVATFNLSQLSGFLELLV
EYFRKCLIDIFGILMEYEVGDPSQRALDHRTGKKDDSQSSEDDSGKEEDDAECLEEEEEE
EEEEEEEEEEEEEEEEDSKKTESEGKSSSALAAPDTTADPKETPRQASKFDKLPIKIVKK
NNLFVVDRSDRLGRVQEFNSGLLHWQLGGGDTTEHILTHFESKMEIPPRRRPPAPLSSTG
KKKELAGKGDSEEQPEKSIIATIDDVLSARPGALPEDSNPGPQTESGKFPFGIQQAKSHR
NIRLLEDEPRSRDETPLCTIAHWQDSLAKRCICVSNIVRSLSFVPGNDAEMSKHPGLVLI
LGKLILLHHEHPERKRAPQTYEKEEDEDKGVACSKDEWWWDCLEVLRDNTLVTLANISGQ
LDLSAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKLSIQDN
NVDLILATPPFSRQEKFYATLVRYVGDRKNPVCREMSMALLSNLAQGDTLAARAIAVQKG
SIGNLIGFLEDGVTMAQYQQSQHTLMHMQPPPLEPPSVDMMCRAAKALLAMARVDENRSE
FLLHEGRLLDISISAVLNSLVASVICDVLFQIGQL
NT seq 7128 nt   +upstreamnt  +downstreamnt
atggccgcgcggtcagcagcggcggcgcgggcacgggcgggcagctgcgagaggcgggcg
ccctcggggccgcggccggcgcccggggcccgggacctggagacgggcgcgcgcggcgcg
gtggcggcggcggctccgggccccatactggggggcggcgacggcggcctgaataatgtg
caccaccaccccctgcacccccgtcacgacctgaacatggcccatagcgcgagcgccgcg
gcggccgccagctccaacagcgcgcagagcggcggctccgaggcggctctcaaggagggt
ggaagcgccgccgcgctgtcctcctccgccgccgtcgcggcctcttcctcctcggcgggc
cccggctcggccatggagaccgggctgctccccaaccacaaactgaaagccgttggcgag
gcccccgctgcaccgccccatcagcagcaccaccaccaccatgcccaccaccaccatcac
caccatgcccaccacctccaccaccaccaccacgcactacagcagcagctaaaccagttc
cagcagccgccgcagccacagcagcagccgccgccgccgccgccgcagcagcagcagcat
cccactgccaacaacagcctgggcggtgcgggcggcggcgcgcctcagcccggcccggac
atggagcagccgcaacatggaggcgccaaggacagtgccgcgggcagtcaggctgacccg
cagggccagcctctgctgagcaagccgggcgacgaggacgacgcgccgcccaagatgggg
gagccggcgggcagccgctatgagcacccaggcctgggcgcgcagcaacagcccgcgccg
gtcgccgtgcccgggggcggcggcggcggcccggcggccgtctcggagtttaataattac
tatggcagcgctgcctctgctagcggcggccccggcggccgcgctgggccttgctttgat
caacatggcggacaacaaagccccgggatggggatgatgcactccgcctctgccgccgcc
ggggcccccagcagcatggaccccctgcagaactcccacgaagggtaccccaacagccag
tacaaccattatccgggctacagccggcccggcgcgggcggcggcggcggcggaggagga
ggaggaggaggcagcggaggaggtggaggaggaggaggagcaggaggagcaggaggagca
gcggcagcggcagcggcagcaggagccggagctgtggcggcggcggccgcggcggcggca
gcagcagcagcaggaggaggcggtggcggcggctatgggggctcgtcctcggggtacggg
gtgctgagctccccgcggcagcagggcggcggcatgatgatgggccccgggggcggcggg
gccgcgagcctcagcaaggcggccgccggtgcggcggcggcggcggggggcttccagcgc
ttcgccggccagaaccagcacccgtcgggggccacgccgaccctcaaccagctgctcacc
tcgcccagccccatgatgcggagctacggcggtagctaccccgactacagcagctccagc
gcgccgccgccgccgtcgcagccccagtcccaggcggcggcggcggcgggggcggcggcg
ggtggccagcaggcggccgcgggcatgggcttgggcaaggacctaggcgcccagtacgcc
gctgccagcccggcctgggcggccgcgcaacaaaggaatcacccggcgatgagccccggc
acccctggaccgaccatgggcagatcccagggcagtccgatggacccaatggtgatgaag
agacctcagttgtatgggatgggcactcacccccattcgcagccgcagcagagcagccca
tacccaggaggtgcctacggccccccaggcgcacagcggtatccccttggcatgcagggc
cgggctccaggggccctgggaggcttgcagtacccacagcagcagatgccaccgcagtat
ggacagcaaggtgtgagtggttactgccagcaaggccagcagccatattacaaccagcag
ccacagccctcgcacctcccgccccaggcacagtacctacagccacagtcccagcagagg
taccagccacagcaggacatgtctcaggaaggctatggaactagagctcagcctcctctg
gcccctggaaaatccaaccacgaagacttgaatttaatacaacaggaaagaccatcgagt
ctaccagacctgtctggctccatcgatgatctccccacgggaacagaagcaactctgagc
tcagcggtcagtgcgtccgggtctacgagcagccagggggatcagagcaacccagctcag
tctcctttctccccacatgcatcaccccacctctccagcatccccggagggccgtcacct
tctcctgttggctctcctgtgggcagcaaccagtcgaggtctggcccaatctcccctgcg
agtataccaggcagccagatgcctccgcagccacctggaagccagtcagaatccagttcc
caccctgccttgagccagtccccaatgccacaggagagaggttttatggcaggcacacag
agaaaccctcagatgtctcagtacggacctcagcagacaggaccatccatgtcacctcac
ccttctcctgggggccagatgcatcctggaatcagtaactttcagcagagtaactcaagt
ggcacgtatggtccacagatgagccagtatggaccccaaggcaactactccagaacccca
acatatagcggggtgcccagtgcaagctacagcggcccagggcctggtatgggcatcaat
gccaacaaccagatgcatggacaagggccaacccagccatgtggtgctatgcccctggga
cgaatgccatcagctgggatgcagagcagaccttttcctggaaacatgagcagcgtcccc
cccagctctcctggcatgtctcaacagggagggccaggaatgggcccaccaatgcccact
gtgaaccgcaaggcccaggaagctgccgcggctgtgatgcaggctgctgcaaactcagcc
caaagcaggcaaggcagctttcctggcatgaaccagagtggactcgtggcctccagctct
ccctacagccagcccatgaacaataactccaacctaatgggcacacaggcccagccctac
agcatgacacccaccatggtgaacagctctacagcatctatgggtcttacagatatgatg
tctcccagtgagtccaaactgtccgtgcctcttaaagcagatggcaaagaagaaggtgtg
ccccagcctgagagcaagtcaaaggatagctacagctctcagggtatttctcagcctcca
actccaggcaacctgccagtcccttccccaatgtcccccagctctgccagcatctcctcc
tttcacggagatgagagtgatagcattagcagcccaggctggcccaagactccatcaagc
cctaagtccagctcctcttccaccactggggagaagatcacaaaagtgtatgagctgggg
actgagccggagaggaagctgtgggtcgaccgctacctgacattcatggaggagaggggg
tcccccgtgtccagtctgccggcagtgggcaagaagcccctggacctgttccgactctat
gtgtgcgtcaaagagatcggaggcttggcgcaggttaataaaaacaagaagtggcgtgag
ctggcaaccaacctgaacgttggcacttcgagcagcgcagccagctccctgaagaagcaa
tatattcagtacctgttcgccttcgagtgcaaaattgagcgtggggaggagcccccgcct
gaagtcttcagcacgggggatgcgaagaagcagcccaagctccagccgccatctcctgct
aactcgggatccttacaaggtccacagacgccacagtcaactggcagcagttccatggca
gaggttcccggtgacctgaagccaccaaccccagcctccacccctcacggacaggggacc
cccatgcaaagcggaagaagcagtacagtcagtgtgcatgacccgttctcagacgtgagt
gattcagcgtacccaaaacggaactccatgactccaaacgccccataccagcagggcatg
ggcatgccagacatgatgggcaggatgccctatgagcccaacaaggaccctttcagtgga
atgagaaaagtgcctggaagcagcgagccctttatgacacaaggacagatgcccaacagc
agtatgcaggacatgtacaaccagagtccctcaggtgccatgtccaatctgggcatggga
cagcggcagcaatttccctatggaaccagttatgaccgaaggcatgaggcttacgggcag
cagtacccaggccaaggccctcccacaggacagccaccgtatggaggacaccagcctggc
ctgtacccacagcagccgaattacaaacgccatatggatggcatgtacgggcctccagcc
aagcgccacgagggagacatgtacaacatgcagtatggcagccaacagcaggagatgtat
aaccagtacggaggctcctactctggcccggacagaaggcccatccagggacagtatccc
tacccctacaatagagaaaggatgcagggcccaggccagatgcagccacatggaatccca
cctcagatgatgggtggccccatgcagtcatcttccaatgaggggcctcagcagaatatg
tgggctacacgcaatgatatgccttatccctaccagaacaggcaaggcccaggtggccct
gcacaggcacccccttacccaggcatgaaccgcacagatgatatgatggtacctgatcag
aggatcaatcacgagagccagtggccttctcatgtcagccagcgccagccttatatgtca
tcatcggcctccatgcaacccatcacgcgcccacctcagtcatcctaccagacgccgccg
tcactgccaaaccacatctccagggcacccagccctgcctccttcccgcgctccctggag
agccgcatgtctccaagcaagtcccccttcctgcctgccatgaagatgcagaaggtcatg
cccacggtccccacatcccaggtcaccggaccacccccacagccaccgccaatcagaagg
gagattacctttcctcctggctcagtagaagcatcgcagccagtcctgaaacaaaggcgg
aagattacctcaaaagatattgttactcccgaggcgtggcgtgtgatgatgtcccttaaa
tccggtctgttggctgagagcacgtgggctttggacaccatcaacattctcctctatgat
gacagcactgtcgccaccttcaatctttcccagctgtcggggttcctggaactactagtg
gagtacttccgaaagtgcctaattgacattttcggtattctgatggaatatgaagtgggt
gaccccagccaaagggcgcttgatcaccgcacagggaagaaagacgacagccagtcctcg
gaggacgactctgggaaagaagaagatgatgccgagtgtctggaggaggaggaggaggag
gaggaggaagaggaggaggaggaagaggaggaggaggaagaggaggaagacagtaaaaag
acagagtcagagggcaagagcagctctgccctagctgctccagacaccactgcggacccc
aaggagacgccgaggcaggccagtaagtttgacaagctgcccataaagattgtcaagaag
aacaacctgtttgtggtggaccggtccgacaggctgggtcgggttcaagagttcaacagc
gggctcctccactggcagctgggtggtggcgacaccactgagcacatcctcactcacttc
gagagcaagatggagatccctcctcgcaggcgtccacctgcgcctctcagctccacgggt
aagaagaaagagctggcaggcaagggcgattctgaagagcagccagagaaaagcatcata
gccaccattgatgatgtcctgtctgcccgaccaggggccctgccggaagacagcaacccc
ggaccccaaaccgagagcggcaagtttccctttggaatccagcaggccaaaagccaccgg
aacatcaggctcctggaggacgagcccaggagccgagacgagactcccctgtgcaccatt
gcgcactggcaggactccctggccaaacgctgcatctgtgtgtctaacatcgtgcggagc
ttgtctttcgtgcctggcaacgacgcagagatgtccaaacatccgggcttggtgctgatc
ctaggaaagttgattctgctgcatcatgagcatccggagagaaaacgggcgccacagacc
tatgagaaggaggaggatgaggacaagggggtggcctgcagcaaagatgagtggtggtgg
gactgcctcgaggtcttgcgggataacacactggtcacattggctaacatttccgggcag
ctagacttgtctgcttacacagagagcatctgcttgccgatcctggacggcttgctgcac
tggatggtgtgcccgtctgcagaggcacaggacccctttcccactgtggggcccaactca
gttctatcgccacaaagacttgtgctggagacactgtgtaaactcagtatccaggacaac
aatgtggacctgatcttggccacacctccatttagtcgtcaggagaaattttatgctaca
ttagttaggtacgttggggatcgcaaaaacccagtctgccgagaaatgtccatggcgctt
ttatcgaaccttgcccagggggatacactggcagcgagggcaatagctgtgcagaaagga
agcattgggaacttgataggcttcctggaggacggggtcacgatggcgcagtatcagcag
agccagcataccctcatgcacatgcagcccccgcctctggaaccccccagtgtggacatg
atgtgcagggcggccaaagctttgctggctatggctagagtggatgagaaccgctcggag
ttccttttgcacgagggtcggttgctggatatctcgatatccgctgtcctgaactctctg
gttgcgtctgtcatctgtgatgtactgtttcagattgggcagttatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (18)   
   RefSeq(nuc) (6)   
   GenBank (6)   
   EMBL (6)   
Protein domain (6)   
   Pfam (6)   
All databases (43)   

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