KEGG   Rattus norvegicus (rat): 295334
Entry
295334            CDS       T01003                                 

Gene name
Bcas2
Definition
(RefSeq) pre-mRNA-splicing factor SPF27
  KO
K12861  pre-mRNA-splicing factor SPF27
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    295334 (Bcas2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rno03041]
    295334 (Bcas2)
   03400 DNA repair and recombination proteins [BR:rno03400]
    295334 (Bcas2)
Spliceosome [BR:rno03041]
 Complex B
  Other components
   Prp19 complex
    295334 (Bcas2)
 Complex C
   Prp19-CDC5 complex
    295334 (Bcas2)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    295334 (Bcas2)
SSDB
Motif
Pfam: BCAS2 HAUS2 DUF4201 THOC7 Tup_N CENP-F_leu_zip DUF3450
Other DBs
NCBI-GeneID: 295334
NCBI-ProteinID: NP_001099928
RGD: 1306485
Ensembl: ENSRNOG00000018783
UniProt: B5DFM8
Position
2
AA seq 225 aa
MAGTGLVAGEVVVDALPYFDQGYEAPGVREAAAALVEEETRRYRPTKNYLSYLTAPDYSA
FETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQDCVNNSMAQLEHQAVR
IENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGAKLRE
MESNWVSLVSKNYEIERTIVQLENEIYQIKQQHGEANKENIRQDF
NT seq 678 nt   +upstreamnt  +downstreamnt
atggcgggcacgggcttggtagcgggggaggtggtagtggatgcgctaccctactttgac
caaggctatgaagcgcctggcgtgcgggaagcggctgcggccctggtggaggaggaaacg
cgcagataccgacctaccaagaactacctgagctacctgacagccccagattattctgcc
tttgaaacagacataatgagaaatgagtttgaaagactggctgctcgacaaccaattgaa
ttactcagcatgaagcgatatgaactgccagccccttcctcgggtcaaaaaaatgacatc
actgcgtggcaagactgtgtaaacaattctatggcccagctggagcatcaggcagtgcgg
attgagaatctggaactgatgtcacagcatgggtgtaacgcctggaaagtgtacaacgaa
aaccttgttcacatgattgaacatgcacagaaagagcttcagaagttaaggaagcatatt
caggatttaaactggcagcgcaagaacatgcagcttacagctggggctaagctgagagaa
atggagtcaaattgggtgtcgctggtgagtaagaactatgagattgagcggactattgta
cagttggagaacgagatctatcaaatcaagcagcagcacggtgaggcaaacaaggaaaac
atccgccaagacttctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (7)   
   Pfam (7)   
All databases (25)   

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