KEGG   Rattus norvegicus (rat): 298648
Entry
298648            CDS       T01003                                 
Symbol
Tardbp
Name
(RefSeq) TAR DNA-binding protein 43 isoform 2
  KO
K23600  TAR DNA-binding protein 43
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03015  mRNA surveillance pathway
rno05014  Amyotrophic lateral sclerosis
rno05022  Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    298648 (Tardbp)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    298648 (Tardbp)
   05022 Pathways of neurodegeneration - multiple diseases
    298648 (Tardbp)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    298648 (Tardbp)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Negative regulators of mRNA 3' end processing
     298648 (Tardbp)
SSDB
Motif
Pfam: TDP-43_N RRM_1 RRM_7 RRM_PARP14_3 RRM_3 RL TDP-43_C RRM_5
Other DBs
NCBI-GeneID: 298648
NCBI-ProteinID: NP_001011979
RGD: 1310906
Ensembl: ENSRNOG00000012455
UniProt: A6IU83 J9JIJ9
Position
5:complement(164330452..164348435)
AA seq 285 aa
MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
LHAPDAGWGNLVYVVNYPKDNKRKMDEADASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
KDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
KQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVA
QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGKSPFGRS
NT seq 858 nt   +upstreamnt  +downstreamnt
atgtctgaatatattcgggtaacagaagatgagaatgatgagcccattgaaataccatca
gaagacgatgggacagtgttgctgtccacagttacagcccagtttccaggggcgtgtggc
ctgcgctaccggaatccagtgtctcagtgtatgagaggtgtccgactggtggaaggaatt
ctgcatgccccagatgctggctggggcaatctggtctatgttgtcaactatcccaaagat
aacaaaaggaaaatggatgaggcggatgcttcctctgcagtgaaagtgaaaagagcagtc
cagaagacatctgacctcatagtgttgggtctcccctggaaaacaacagagcaggaccta
aaagactacttcagtacttttggagaggttcttatggttcaggtcaagaaagatcttaaa
actggtcactcaaaagggtttggctttgttcgatttacggaatatgaaactcaagtgaaa
gtaatgtcacagcgacatatgatagatgggcgatggtgtgactgtaaacttccaaattct
aagcaaagcccagacgagcctttgagaagcagaaaggtgtttgttggacgttgtacagag
gacatgactgctgaagagcttcagcagttcttctgtcagtatggagaagtggtagatgtc
ttcattcccaaaccattcagagcttttgcctttgttacctttgcagatgataaggttgcc
cagtctctttgtggagaggacttgatcattaaaggaatcagcgtgcatatatccaatgct
gaacctaagcataatagcaatagacagttagaaagaagtggaagatttggtggaaaatct
ccatttgggagatcatga

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