KEGG   Rattus norvegicus (rat): 300034
Entry
300034            CDS       T01003                                 
Symbol
Tigd5
Name
(RefSeq) tigger transposable element derived 5
Organism
rno  Rattus norvegicus (rat)
SSDB
Motif
Pfam: DDE_1 HTH_Tnp_Tc5 CENP-B_N HTH_Tnp_1 HTH_28 HTH_23
Other DBs
NCBI-GeneID: 300034
NCBI-ProteinID: NP_001119740
RGD: 1311576
Ensembl: ENSRNOG00000008686
UniProt: B1WC39
Position
7:109477438..109479957
AA seq 642 aa
MYPASPSAGPALHPVPHRARLPRPRCLAEPPRSPAPGPGSTARPPPPAPGPRPRVAVKMT
FRKAYSIKDKLQAIERVKGGERQASVCRDFGVPGGTLRGWLKDEPKLRWFLDQLGGEVGT
QRKKMRLANEEEIDRAVYSWFLTLRQHGVPLSGPVIQAQAEAFARQIYGPECTFKASHGW
FWRWQKRHGISSQRIYGEAEPPVAGPAPVKEEPAQPSSAGLLLDGTPATLPHSEGGYGDE
QIYNANVTGLYWRLLPEQNATPGTGDSREPGECSRRWCSDRVTVLLAANLTGSHKLKPLV
IGQLPDPPSLRHHNQDKFPASYRYSPDAWLSRPLLRGWFFEEFVPGVKRYLRRSCLQQKA
VLLVAHPPCPSWTTSMPAVEESEGTPRQCQPELLGSPEELQTPDGAVRVLFLSRGNSRAH
IPAPLEHGVVAAFKHLYKRELLRLAVSCASGSPLDFMRSFMLKDMLYLAGLSWDLVQAGS
IERCWLLGLRAAFEPGQQPAHQVEEAAEHSRMLSDLTHLAALAYKRLAPEEVAEWLHLDD
DGGLPEGCGEEVAPAAPPSPASLPSSIGAGEEEEEEATEQGGVLVPTAGEAVWGLETALR
WLESQDPREVGPLRLVQLRSLITMARRLGGIGPSAAASDDGV
NT seq 1929 nt   +upstreamnt  +downstreamnt
atgtaccccgcgagcccttcagccggcccagccttgcacccggtccctcatcgcgctcgt
cttccccggccccggtgccttgcggagccaccgcgatcgccggcgcccggcccgggttcc
acagcgcgcccaccgcccccagcacccgggccgaggccccgggtggccgtgaagatgact
ttccgtaaggcctactccatcaaagacaagctacaagccatcgagcgcgtcaagggcggt
gagcggcaggccagcgtgtgccgcgactttggcgtgccaggaggcacactgcgcggctgg
ctcaaggacgagcccaagttgcgctggtttttggaccagctaggtggagaagtgggcacg
cagcgcaagaagatgcgtctggccaacgaggaggagatcgaccgcgccgtctactcgtgg
ttcctcaccttgcgccagcacggcgtgccactgtccggaccagttatccaagctcaggct
gaggcctttgctcgccagatctacggccccgagtgtaccttcaaggctagccacggctgg
ttctggcgctggcagaagcgccatggcatctctagccagcgcatctatggtgaggctgag
cccccggtcgcaggacccgcgcctgtcaaagaggagcctgcgcagccctcgagcgcaggt
cttctacttgacggtacgccggccactctaccccattccgagggtggctatggcgacgag
cagatctacaatgctaacgttactggtctttattggaggttacttccggagcagaacgca
actccgggcactggggactccagggagcctggtgagtgcagccggcgctggtgtagcgac
cgagtgacagtactgctggctgccaacctgacgggcagccacaagctaaaaccactagtc
atcgggcagctaccagacccacccagcctgcgtcaccacaaccaggacaagttcccagcc
tcctaccgctacagtccagatgcctggctcagccgccctcttcttcggggctggttcttc
gaggaattcgtccctggtgtcaagcgctacctgcgccgaagctgcctgcaacagaaggct
gtgctgctggtggcccatccaccctgtccaagctggaccactagcatgcctgccgtggag
gagagcgaggggactcccaggcagtgccagcctgagctccttgggtccccagaggagctt
caaacacctgatggtgcggttcgagtcctcttcttgtccaggggcaacagccgagcacac
atccctgcaccgttggagcatggtgtggtggcagccttcaagcatttgtacaaacgggag
cttctgaggcttgccgtgtcttgtgccagtggctctcctctggacttcatgaggagcttc
atgctcaaggacatgctatacctggctggcctctcttgggacttggtccaggcaggcagc
atagagcgctgctggctgctgggtctgcgagcagcctttgagcctgggcagcagcctgcc
caccaggtagaggaggctgccgaacacagcaggatgctcagtgacctcacacatctggca
gctctggcttacaaacgcctggcacctgaagaggtggcagagtggctacacctggatgat
gatggaggtctccctgagggttgcggagaagaagtggcccctgcagctcctccatcccca
gctagcctgccctccagcattggggctggagaggaggaggaggaagaggccactgaacaa
ggaggagttttggtccccactgctggggaagctgtttggggactagagacagctctgagg
tggttggaaagtcaggatcctagagaagtgggaccgctgaggcttgtgcagctacggtcc
ctcatcaccatggcacggaggcttgggggcattggcccctcagcagcagcttctgatgat
ggtgtgtga

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Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (6)   
   Pfam (6)   
All databases (18)   

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