KEGG   Rattus norvegicus (rat): 300807
Entry
300807            CDS       T01003                                 

Gene name
Rora
Definition
(RefSeq) nuclear receptor ROR-alpha isoform X3
  KO
K08532  RAR-related orphan receptor alpha
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04659  Th17 cell differentiation
rno04710  Circadian rhythm
rno05017  Spinocerebellar ataxia
rno05321  Inflammatory bowel disease
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09151 Immune system
   04659 Th17 cell differentiation
    300807 (Rora)
  09159 Environmental adaptation
   04710 Circadian rhythm
    300807 (Rora)
 09160 Human Diseases
  09163 Immune disease
   05321 Inflammatory bowel disease
    300807 (Rora)
  09164 Neurodegenerative disease
   05017 Spinocerebellar ataxia
    300807 (Rora)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    300807 (Rora)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:rno03310]
    300807 (Rora)
Transcription factors [BR:rno03000]
 Eukaryotic type
  Zinc finger
   Cys4 thyroid hormone receptor-like
    300807 (Rora)
Nuclear receptors [BR:rno03310]
 1. Thyroid hormone like
  1F. RAR-related orphan receptor
   300807 (Rora)
SSDB
Motif
Pfam: zf-C4 Hormone_recep
Other DBs
NCBI-GeneID: 300807
NCBI-ProteinID: XP_008764632
RGD: 1308419
Ensembl: ENSRNOG00000027145
UniProt: F1LZZ3
Position
8
AA seq 467 aa
MYFVIAAMKAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCL
IDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQRDHQQQP
GEAEPLTPTYNISANGLTELHDDLSTYMDGHTPEGSKADSAVSSFYLDIQPSPDQSGLDI
NGIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQYLREELQ
QITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLL
KAGSLEVVFIRMCRAFDSQNNTVYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLT
EDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHREDGILTKLICKVST
LRALCGRHTEKLMAFKAIYPDIVRLHFPPLYKELFTSEFEPAMQIDG
NT seq 1404 nt   +upstreamnt  +downstreamnt
atgtattttgtgatcgcagcgatgaaagctcaaattgaaattattccatgcaagatctgt
ggagacaaatcgtcaggaatccattatggtgtcattacgtgtgaaggctgcaagggcttt
ttcaggagaagtcagcagagcaatgccacctactcctgtcctcggcagaagaactgtttg
atcgataggaccagcagaaaccgctgccagcactgccggctgcagaagtgcctggctgtg
gggatgtctcgagatgctgtcaagtttggccggatgtccaagaagcaaagagacagcctg
tacgccgaggtgcagaagcaccggatgcagcagcagcagcgagaccaccagcagcaacct
ggggaggctgagccgctgacgcccacctacaacatctcagccaatgggctgacggaactg
catgatgacctcagcacctacatggacggccacacccccgagggcagcaaggccgactca
gctgtcagcagcttctacctggacatccagccctccccagaccagtcgggactggacatc
aatgggatcaaacccgaacccatatgtgactacacaccagcatctggcttcttcccctac
tgttccttcaccaacggagagacttccccaaccgtgtccatggcggaactagaacacctt
gcacagaacatatccaaatcgcacctggaaacctgccaatacttgcgggaagagctccag
cagataacgtggcagaccttcctgcaggaggagattgagaactaccagaacaagcagaga
gaggtgatgtggcagttgtgtgctatcaagattacagaagctatccagtatgtggtggag
ttcgccaaacgcatcgacgggtttatggagctgtgtcaaaatgatcaaattgtgcttcta
aaagcaggctctctagaggtggtgtttattaggatgtgccgtgcctttgactctcagaac
aacaccgtgtactttgatgggaagtatgctagccccgatgtcttcaaatccttaggttgt
gaagacttcattagctttgtgtttgaatttgggaagagtttgtgttctatgcatctgact
gaagacgaaatcgcattgttttctgcatttgtactgatgtcagcagatcgctcctggctt
caggaaaaggtaaaaatagaaaaactgcaacagaaaattcagctagcccttcaacatgtc
cttcagaagaaccaccgagaagatggaattctaacaaagctaatatgcaaggtgtctacg
ttaagagccctatgcggacgacatacagaaaagctaatggcatttaaagcaatataccca
gacattgtgcgactccattttcctccgttatacaaggaattgttcacttcagaatttgag
ccagcaatgcaaatcgatgggtaa

KEGG   Rattus norvegicus (rat): 309288
Entry
309288            CDS       T01003                                 

Gene name
Rorb
Definition
(RefSeq) nuclear receptor ROR-beta
  KO
K08533  RAR-related orphan receptor beta
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04710  Circadian rhythm
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09159 Environmental adaptation
   04710 Circadian rhythm
    309288 (Rorb)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    309288 (Rorb)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:rno03310]
    309288 (Rorb)
Transcription factors [BR:rno03000]
 Eukaryotic type
  Zinc finger
   Cys4 thyroid hormone receptor-like
    309288 (Rorb)
Nuclear receptors [BR:rno03310]
 1. Thyroid hormone like
  1F. RAR-related orphan receptor
   309288 (Rorb)
SSDB
Motif
Pfam: zf-C4 Hormone_recep
Other DBs
NCBI-GeneID: 309288
NCBI-ProteinID: NP_001257887
RGD: 1306778
Ensembl: ENSRNOG00000013413
UniProt: A0A0G2JX88
Structure
PDB: 
1NQ7 1K4W 1N4H

Position
1
AA seq 459 aa
MRAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRN
RCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQQRLQEQRQQQSGEAEALAR
VYSSSISNGLSNLNTETGGTYANGHVIDLPKSEGYYNIDSGQPSPDQSGLDMTGIKQIKQ
EPIYDLTSVPNLFTYSSFNNGQLAPGITMSEIDRIAQNIIKSHLETCQYTMEELHQLAWQ
THTYEEIKAYQSKSREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCL
EVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIA
LFSSAVLISPDRAWLLEPRKVQKLQEKIYFALQHVIQKNHLDDETLAKLIAKIPTITAVC
NLHGEKLQVFKQSHPDIVNTLFPPLYKELFNPDCAAVCK
NT seq 1380 nt   +upstreamnt  +downstreamnt
atgcgagcacaaattgaagtgataccatgcaaaatttgtggcgataaatcctccgggatc
cactacggagtcatcacgtgtgaaggctgcaagggattcttcaggaggagccagcagaac
aatgcctcttactcctgcccaaggcagagaaactgtttaattgacagaaccaacaggaac
cgttgccaacactgccgcctgcagaagtgtcttgccctaggaatgtcaagagatgctgtg
aagtttgggaggatgtccaagaagcagcgggacagcctgtatgctgaggtgcagaagcat
cagcagaggctgcaggagcagcggcagcagcagagtggggaggcagaggcccttgccagg
gtgtacagcagcagcattagcaatggcctcagcaacctgaacaccgagaccggcggcaca
tacgccaacgggcacgtcattgacctgcccaagtccgagggttactacaacatagattcc
ggtcaaccgtctcccgatcagtcaggactggacatgactggaatcaaacagataaagcaa
gaacctatctatgacctcacatccgtacccaacttgtttacctatagctctttcaacaac
gggcagttagctcccgggataacaatgtctgagatcgatcgaattgcacagaacatcatt
aagtcccatttggagacgtgccagtacacaatggaagagctccatcagctggcatggcag
acccacacctatgaggaaataaaggcatatcaaagcaagtccagggaggctctgtggcag
cagtgtgccatccagatcacccacgccatccaatatgtggtggagttcgcaaagcggata
acaggcttcatggagctgtgtcagaacgatcagatcttacttctgaagtcaggttgcttg
gaagtggttttagtgagaatgtgccgtgccttcaacccattaaacaacactgttctgttt
gaaggaaaatatggaggaatgcaaatgttcaaagccttaggttctgatgacctagtgaat
gaagcatttgactttgcgaagaatctgtgttccttgcagctgaccgaggaagagattgct
ctgttctcctctgctgttctgatatccccagaccgagcctggctgttagaaccaagaaaa
gtccagaagcttcaggaaaaaatttattttgcacttcaacatgtgattcagaagaatcac
ctggatgatgagaccctggcaaagttaatagccaagataccaactatcacggcagtctgc
aacttgcatggggagaagctacaggtatttaagcagtctcatccagacatagtgaataca
ctgtttcctccattgtacaaggagctctttaatcctgactgtgctgcggtctgcaaatga

KEGG   Rattus norvegicus (rat): 368158
Entry
368158            CDS       T01003                                 

Gene name
Rorc
Definition
(RefSeq) nuclear receptor ROR-gamma isoform X1
  KO
K08534  RAR-related orphan receptor gamma
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04659  Th17 cell differentiation
rno04710  Circadian rhythm
rno05321  Inflammatory bowel disease
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09151 Immune system
   04659 Th17 cell differentiation
    368158 (Rorc)
  09159 Environmental adaptation
   04710 Circadian rhythm
    368158 (Rorc)
 09160 Human Diseases
  09163 Immune disease
   05321 Inflammatory bowel disease
    368158 (Rorc)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    368158 (Rorc)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:rno03310]
    368158 (Rorc)
Transcription factors [BR:rno03000]
 Eukaryotic type
  Zinc finger
   Cys4 thyroid hormone receptor-like
    368158 (Rorc)
Nuclear receptors [BR:rno03310]
 1. Thyroid hormone like
  1F. RAR-related orphan receptor
   368158 (Rorc)
SSDB
Motif
Pfam: zf-C4 Hormone_recep
Other DBs
NCBI-GeneID: 368158
NCBI-ProteinID: XP_006232988
RGD: 1595785
Ensembl: ENSRNOG00000020836
Position
2
AA seq 508 aa
MDRAPQRHHRTSRELLAAKKTHTSQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQ
CNVAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLHAEVQK
QLQQQQQREQVAKTPPAGSHGADTLTYTLGVPDGQLPLGASPDLPEASACPPGLLRASGS
GPPYSNTLAKTEVQGASCHLEYSPERGKAEGRDSIYSTDGQLTLGRRGLQLGEPEQGSDS
HCSPSFCSAPEAPYASLTDIEYLVQNVCKSYRETCQLRLEDLLRQRTNLFSREEVTSYQR
KSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIILLKAGAMEVVLVRMCRAYN
ANNHTVFFEGKYGGVELFRALGCSELISSIFDFSHFLSALCFSEDEIALYTALVLINANR
PGLQEKRRVEHLQYNLELAFHHHLCKTHRQGLLAKLPPKGKLRSLCSQHVEKLQDFQHLH
PIVVQAAFPPLYKELFSTDIESSEGLSK
NT seq 1527 nt   +upstreamnt  +downstreamnt
atggacagggccccacagagacaccaccgaacatctcgggagttgctggctgcaaagaag
acccacacctcacaaatcgaagtgatcccttgcaagatctgtggggacaagtcatctggc
atccactacggggttatcacctgtgaggggtgcaagggcttcttccgccgcagccagcag
tgcaatgtggcctactcctgcacccgtcagcagaactgccccattgaccgaaccagccgc
aaccgatgccagcactgccgcctgcagaagtgcctggctctgggcatgtccagagatgct
gtcaagttcggccgaatgtccaagaagcagagggacagtctgcatgcagaggtgcagaaa
caactgcaacagcagcagcaacgggaacaagtagccaagactcctccagctgggagccat
ggagcagacacactcacatacactttaggggtcccagatgggcagctaccactgggcgcc
tcacctgacctgcccgaggcctctgcttgtccccctggcctcctgagagcctcaggctct
ggcccaccatattccaataccttggccaaaacagaggtccaaggggcctcctgccacctt
gagtatagcccagagcgaggcaaagctgaaggcagagacagcatctatagcactgacggc
cagcttactcttggaagacgtggacttcagcttggggaaccagaacagggctcagacagc
cactgcagtcccagtttctgcagtgccccagaggcaccatatgcctctctgacagacata
gagtacctggtacagaatgtctgcaagtcctaccgagagacgtgccagctacgcctggag
gaccttctacggcagcgcaccaacctcttctcacgggaggaggtgaccagctaccagagg
aagtcaatgtgggagatgtgggagcgctgtgcccaccacctcactgaggccattcagtac
gtggtggagttcgccaagcggctctcaggcttcatggagctgtgccagaatgatcagatc
atactactgaaagcaggagcaatggaagtcgtcctcgtcagaatgtgccgggcctacaat
gccaacaaccacacagtcttttttgaaggcaaatacggtggtgtggagctgttccgagcc
ttgggctgcagcgagctcatcagctccatattcgacttttcccacttcctcagcgccctg
tgtttttctgaggatgagattgccctctacacggccttggttctcatcaatgccaaccgt
cctgggctccaagaaaagaggagagtggagcatctgcaatacaatttggagctggccttt
catcatcatctctgcaagactcatcgacaaggcctcctagccaagctgccacccaagggg
aagctccggagcctgtgcagccaacatgtggaaaagctacaggacttccagcacctccac
cccatcgtggtccaagccgccttccctccactctataaggaactcttcagcactgacatt
gagtcctctgaggggctgtcaaagtga

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