KEGG   Rattus norvegicus (rat): 304344
Entry
304344            CDS       T01003                                 

Gene name
Ap4m1
Definition
(RefSeq) AP-4 complex subunit mu-1
  KO
K12402  AP-4 complex subunit mu-1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04142  Lysosome
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome
    304344 (Ap4m1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rno04131]
    304344 (Ap4m1)
Membrane trafficking [BR:rno04131]
 Endosome - Golgi transport
  Others
   AP-4 complex
    304344 (Ap4m1)
SSDB
Motif
Pfam: Adap_comp_sub Clat_adaptor_s
Other DBs
NCBI-GeneID: 304344
NCBI-ProteinID: NP_001033066
RGD: 1310233
Ensembl: ENSRNOG00000001353
UniProt: Q2PWT8
Position
12
AA seq 453 aa
MISQFFILSSKGDPLIYKDFRGDSGGRDVAELFYRKLTGLPGGESPVVMYHDDRHFIHIR
HSGLYLVATTSENVSPFSLLELLSRLATLLGDYCGSLNEGTISRNVALVYELLDEVLDYG
YVQTTSTDMLRNFIQTEAAVSKPFSLFDLSSVGLFGAETQQNRVAPSSAASRPVLSSRSD
QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSSSEICIGLTEEFCVGKSE
LRGYGPGIRVDEVSFHSSVNLDEFESHRILHLQPPQGELTVMRYQLSDDLPSPLPFRLFP
SVQWDQGSGRLQVYLKLRCDLPPKSQALNIHLHLPLPRGVVSLSQELSSPDQKAELGEGA
LHWDLPRVQGGSQLSGLFQMDVPGLQGPPSRGPSPSAPPLGLGPASLSFELPRHTCSGLQ
VRFLRLSFSACGNANPHKWVRHLSHSNAYVIRI
NT seq 1362 nt   +upstreamnt  +downstreamnt
atgatttcccagttcttcattctgtcttccaagggggatccgctcatctataaagacttc
cgaggggatagtggtggtcgtgatgtggccgagctcttctaccggaagctgacgggactg
ccgggaggcgagtccccggttgtcatgtatcacgatgatcgtcattttattcacatcaga
cacagtggtctctatttggtggccacaacttcagaaaatgtctctcctttcagcctcctg
gagctactttccaggttagccactctcttgggtgactactgtggctcactcaatgagggg
accatctcacggaatgtggcgcttgtctacgaactcctggatgaagtgctggattacggc
tatgtgcagactacgtccacagacatgctgaggaacttcatccaaactgaagccgcggtc
agcaagcctttcagcctcttcgacctcagcagcgtcggtctgtttggggcagagacgcag
cagaacagagtggccccaagcagtgcagccagccgccctgtcctgtccagtcgttctgac
cagagccaaaagaatgaagtgtttttagatgtggtcgaaaggctgtctgttctgattgca
tctaatggctccctgttgaaggtggatgtccaaggagagatccggctcaagagcttcctc
cccagcagttctgagatatgcattggcttgacagaagaattctgtgttggaaagtcagaa
ctgagaggttatgggccagggattcgagttgatgaggtgtcattccatagctctgtcaat
ctagatgagtttgaatctcatcggatcctccacctgcagccgcctcagggcgagctgact
gtgatgagataccagctctctgatgacctcccctcaccacttcccttccggctgtttccc
tctgtacaatgggaccaaggctcaggccggctccaggtttacctgaagttacggtgtgac
ctgcccccaaagagccaagctctcaacattcatctgcaccttcccctgcctcgaggggtc
gtcagcctgtctcaggaactgagcagcccagatcagaaggcagagctgggagaaggagcc
cttcactgggacctgccccgggtacaaggaggttctcaactctctggccttttccagatg
gatgtccctggcttgcagggacctcccagccgtgggccgtccccctcagcaccccccttg
gggctgggtcctgccagcctctcctttgaactccctcggcacacatgctctggcctccag
gttcgattcctcagactgtcctttagcgcctgtggtaatgccaaccctcacaagtgggtt
cgacatctaagccacagcaacgcctacgtaattcggatttga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (8)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (6)   
DNA sequence (12)   
   RefSeq(nuc) (6)   
   GenBank (3)   
   EMBL (3)   
Protein domain (2)   
   Pfam (2)   
All databases (32)   

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KEGG   Rattus norvegicus (rat): 310746
Entry
310746            CDS       T01003                                 

Gene name
Ap4b1
Definition
(RefSeq) AP-4 complex subunit beta-1
  KO
K12401  AP-4 complex subunit beta-1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04142  Lysosome
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome
    310746 (Ap4b1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rno04131]
    310746 (Ap4b1)
Membrane trafficking [BR:rno04131]
 Endosome - Golgi transport
  Others
   AP-4 complex
    310746 (Ap4b1)
SSDB
Motif
Pfam: Adaptin_N Cnd1 B2-adapt-app_C HEAT_2 HEAT
Other DBs
NCBI-GeneID: 310746
NCBI-ProteinID: NP_001101179
RGD: 1310529
Ensembl: ENSRNOG00000019455
UniProt: D4AD35
Position
2
AA seq 739 aa
MPYLGSEDVVKELKKALCNPHIQADRLRYRNVIQRVIRHMTQGLDMSDVFMEMVKASATV
DIVQKKLVYLYMGTYAPLKPDLALLAINTLCKDCSDPNPMVRGLALRSMCSLRMPGVQEY
IQQPVVNGLRDKASYVRRVAVLGCAKMHNLHGDSEVDGALVNELYSLLRDQDPIVVVNCL
RSLEEILKQEGGVVINKPIAHHLLNRMSKLDQWGQAEVLNFLLRYQPRSEEELFDILNLL
DSYLKSSSTGVVMGATKLFLILAKKFPHVQTDVLVRVKGPLLAACSSESRELCFAALCHV
RQVLHSLPGHFSSHYKKFFCSYSEPHYIKLQKVEVLCELVNDENVQQVLEELRGYCTDVS
ADFAQAAIFAIGNIAKTYTDQCVQILTELLGLRQEHITTVVVQTFRDLVWLCPQCTEAVC
QALPGCEENIQDSEGKQALIWLLGVHGEKIPNAPYVLEDFVESVKSETFPAVKMELLTAL
MRLFLSRPAECQDVLGRLLLYCIEEEKDMAVRDRGLFYYRLLLVGIDKTKQILCSPKSDP
SLGLLEDQPERPVNSWASDFNTLAPVYGKAHWATISKCQKIEPHRLELPHNASFATSGHL
IAEENKEGAQEPPDSGALVLVPNLQLTAECFEKTWLSLTVSYHQVLPWQGEVQPDTLQMA
LKVVNIQTIAMSKPGAQPWKAYLSAQDGTGGLFLTELLLKPENSEVQISVKQSEARTEAL
RGFVSVLETVIGTVGDIKS
NT seq 2220 nt   +upstreamnt  +downstreamnt
atgccatatcttggctctgaggacgtggtgaaggaactgaagaaggctctgtgtaaccct
catattcaggctgataggctgcgctaccggaatgtcatccagcgagttattaggcacatg
actcagggcttggacatgtctgatgttttcatggaaatggtgaaggccagcgccactgta
gatatcgttcagaaaaagttggtttatctgtatatgggcacatatgcacctttaaaacct
gatctagcgctcttggctatcaatacactctgcaaagactgctcagaccccaacccaatg
gtgcgaggactggcactacggagcatgtgtagcctcaggatgcctggtgtacaggagtat
atccagcagcctgttgtcaatggtctgcgggacaaagcttcatatgtcagaagagtggcc
gtccttggctgtgccaagatgcataatcttcatggagactctgaagtagatggtgctcta
gtcaatgagttatacagtcttctgcgtgaccaggatccaattgtggttgtgaactgtctg
aggtctctagaggaaattttaaaacaggaaggaggtgttgtcattaataagcccattgcc
caccatctcttaaatagaatgtcaaaactggaccagtggggccaggctgaagtactgaac
tttctgctccgctaccaaccccgcagtgaggaggaactgtttgatatcctcaatttgttg
gacagctatctcaagagcagcagcactggtgtggtgatgggagccaccaaactttttctg
attttggcaaaaaagttcccccacgtacaaactgatgtgcttgtacgagtcaagggaccc
ttgctggctgcctgttcttcagagagccgagagctctgctttgctgctctctgccatgtc
cgccaggtcttgcatagtttgccaggtcactttagcagtcactacaaaaagtttttttgc
tcttactcggagccccactatatcaagctgcagaaggtggaggtgctgtgcgagctggtg
aacgatgagaacgtgcagcaggtgcttgaagagctgcgagggtactgcactgatgtgtct
gctgactttgcacaggctgccatctttgctataggtaatattgccaagacttacacagac
caatgtgtgcagattctaacagagttgctgggacttcgacaagaacatatcactacagtg
gtggtgcagactttccgagaccttgtctggttatgccctcagtgtactgaagctgtgtgt
caggccctgcccggctgtgaggagaacattcaagacagtgaggggaaacaggcacttatc
tggttacttggggtccacggggaaaaaatccccaatgctccttatgtgttggaggacttt
gtagaaagtgtgaagtcggagacttttcctgctgttaagatggagctgctgacggctctg
atgcgccttttcctctcacgccctgctgagtgccaggacgtgctgggacgtctgttgctt
tactgcatagaggaagaaaaggatatggctgtacgagaccggggtctcttctattatcgc
ctcctcttggttggcattgataaaactaagcagatcctgtgtagtcctaagtctgaccct
tctcttggacttttggaggatcaaccagaacgaccagtgaatagctgggcttcagacttc
aatacgctggcgccagtgtatggcaaagcccactgggcaactatctctaaatgccagaag
atagagcctcatcgccttgagcttccccacaatgcatcctttgccacatcaggacacttg
attgctgaagagaacaaagaaggagcacaagaacctccggactctggagctctcgtgctg
gttcccaatctccagcttaccgctgagtgttttgagaaaacatggcttagcctcacagtt
tcttaccatcaggtgcttccttggcagggagaagtccagcccgacactctacaaatggct
ctaaaagtagtgaacattcagaccatcgcaatgagcaagcctggggcacagccctggaaa
gcctacctcagtgctcaggacggtactggtggtctcttcttaacggaattgctgttgaag
cctgagaactcagaagtgcaaatctctgtgaagcagagtgaggccaggactgaagccctg
cgtggtttcgtctctgtcctggaaactgtgattggaacggttggagacataaaatcataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (8)   
   UniProt (1)   
   RefSeq(pep) (7)   
DNA sequence (9)   
   RefSeq(nuc) (9)   
Protein domain (5)   
   Pfam (5)   
All databases (32)   

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KEGG   Rattus norvegicus (rat): 311404
Entry
311404            CDS       T01003                                 

Gene name
Ap4e1
Definition
(RefSeq) AP-4 complex subunit epsilon-1
  KO
K12400  AP-4 complex subunit epsilon-1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04142  Lysosome
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome
    311404 (Ap4e1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rno04131]
    311404 (Ap4e1)
Membrane trafficking [BR:rno04131]
 Endosome - Golgi transport
  Others
   AP-4 complex
    311404 (Ap4e1)
SSDB
Motif
Pfam: Adaptin_N AP4E_app_platf Cnd1 Coatomer_b_Cpla Coatamer_beta_C
Other DBs
NCBI-GeneID: 311404
NCBI-ProteinID: NP_001178671
RGD: 1562199
Ensembl: ENSRNOG00000022938
UniProt: D3ZX21
Position
3
AA seq 1130 aa
MSDMVERTLTALPGLFLQNQLGGPAASRAPFFSRLGGLIRGVTALSSKHEEEKLIQQELS
SLKATVSAPTTTLKMMKECMVRLIYCEMLGYDASFGYIHAIKLAQQGNLLEKRVGYLAVS
LFLHESHELLLLLVNTVVKDLQSTNLVEVCMALTVVSQIFPREMIPAVLPLIEEKLQHSK
EIIRRKAVLALYKFYLIAPNQVQHIHTKFRKALCDRDVGVMAASLHIYLRMIKENSSGYK
DLTESFVTILKQVVGGKLPVEFSYHSVPAPWLQIQLLRILGLLGKDDERTSELMYDVLDE
SLRRAELNHNVTYAILFECVHTIYSIYPKSELLEKAAKCIGKFVLSPKINLKYLGLKALT
YVIQQDPSLALQHQITIIECLDHPDPIIKRETLELLYRITNAQNVVVIVQKMLEYLHQSK
EEYIIINLVGKIAELAEKYAPDNVWFIQTMNAVFSVGGDVMHPDILSNFLRLLAEGFDDE
TEDQQLRLYAVQSYLTLLDMENTFYPQRFLQVMSWVLGEYSYLLDRESPEAVMTRLYKLL
RSDSISSETKAWLFAAVTKLTPQAHSSPIVENLIQEFTVSLNTCLRQHAFELKHLHENEE
LMKSLLQSAQNCDDIMADASLSFLDGFVAEGLSQGAAPYKPRHQRQEEQLSQEKVLNFEP
YGLSFSSSGFTGRQSPAGVSLGSDISGNSAETGLKEAGSLKMDGIKKLWGKEGYLPKKES
GAADKLEAAHAPAESAMMENVDQAMTRKDQAQGHTPSTEEKEKQLLASSLFVGLGPENTI
NLLGKADVVSYKFRRKSKPKVAQSDKMPSAHAAPSSTLSPVSDVAGGDEDSLSAADRGDG
ELGSELLGSESVLELPSVENLSSVSLPVSSLFAGNDMEVFHPPSSSATSAVKEVSLAALL
EETPECRRSALVEICSNETVAVSSYKVWKDECLLLVCSVTSKTDSEFTDAQLEIFPLENF
KIIEQPGCPSPVMEAESTKSFQYGVQMESPCVEGTLSGFIKYQMMDTHPVQLEFSMNLSL
LDFIRPLKISTEDFGKLWLSFANDVKQNIKISEPRVALASVLTELQQKLRLCVVDVIGSE
GLLACKLLPSTPCILHCRVHADVVALWFRSSSSVLSDCLSCHCQKVMQTS
NT seq 3393 nt   +upstreamnt  +downstreamnt
atgagcgacatggtggagaggacgctgaccgcactgccggggctcttcttgcagaaccag
ctgggagggcctgcggcctccagagcacccttcttctccaggctgggcggcctcatccgt
ggcgtcactgcgctctcatccaagcacgaagaagagaagttaatccagcaggaactgagt
agtctgaaggcgactgtttctgctcctactacaacactgaaaatgatgaaggaatgtatg
gtgagacttatatactgtgagatgcttggatacgatgcttcttttggttatatacatgca
atcaagttggcccaacaaggaaacctcttagaaaaaagagtgggttatttggctgtttct
ctgtttctacatgaaagtcatgaacttttgcttctccttgtgaatacagtggtaaaggac
ctgcagagcactaatctggtagaagtgtgtatggcactcactgtcgtcagccagattttc
cctcgagaaatgattccagctgtccttccactaatagaagagaaactccaacattctaag
gagattatacgaagaaaagcagttctggcattatacaaattttatctcattgcccctaat
caagtacagcatatccatactaagtttcggaaagcactctgtgacagagatgttggggtc
atggctgcctctttgcatatataccttaggatgattaaggaaaattcttctggatataaa
gacttgactgagagttttgtaacaattttaaagcaggtggtggggggaaagctccctgta
gagttcagttaccacagtgtgccagcgccatggttacagattcagctcttgagaatactg
ggactgctgggaaaagacgatgaaaggacaagtgaactaatgtatgatgttcttgatgaa
tccttacgaagagccgagttaaatcacaatgtcacttacgctattctgtttgagtgtgta
cacacaatctattctatttatcctaaatcagaattacttgagaaggctgccaagtgcatt
ggaaaatttgttctgtcacctaaaataaacctcaaatatttaggactgaaggctcttacc
tatgttatccagcaggatccttctctggctcttcaacaccagataaccataattgaatgc
ctagaccaccctgatcccattattaaaagagagactctggaacttctttacagaattaca
aatgcacagaatgtagtagttattgtacagaaaatgcttgaatatttacatcagagcaaa
gaagagtacatcatcatcaacttagtcggcaaaatagctgaattggctgagaaatatgct
cctgacaacgtgtggttcattcagacgatgaatgctgtgttttcagtgggaggagatgta
atgcacccagacattctcagtaactttctgagactgctagcagaaggttttgatgatgaa
acagaagatcaacagttaagactctatgcagttcagtcttacctcaccttactagacatg
gaaaacactttctatccacagagatttcttcaagttatgagttgggtattaggagagtat
tcctacctcttagatagagaaagccccgaggcagttatgaccaggctctacaagttactg
aggagtgactccatttcttcagaaacgaaagcatggttgtttgctgcagtaaccaagtta
acacctcaagctcattcttctcccatagttgagaacttaatccaagaattcactgtatcc
ttgaatacttgtctgagacaacatgcatttgaattgaaacatctacatgaaaatgaagag
cttatgaagagcttgcttcagagtgctcagaattgtgacgacatcatggcagatgcttct
ttatcttttctggatggttttgtggctgaaggactcagtcagggagcagcaccttataag
ccccgtcaccagcgccaagaggagcagctctctcaggaaaaagttctcaattttgaacca
tatggactatcattttcttcatctggcttcactggacgacagtctcctgctggcgtttct
ctgggctcagatatatctggaaacagtgctgaaacagggctgaaagaggcaggtagcctg
aagatggacggcataaagaaattatggggtaaagaaggttatctccccaagaaggagagt
ggagctgctgataaactggaagccgcacatgctcctgcagagagtgcaatgatggagaat
gtagaccaagccatgactaggaaggaccaagctcaaggccacaccccttctacagaggag
aaagaaaagcagctgttggcatcatcgctgtttgttgggctaggaccagaaaatacgatc
aatttgttgggaaaagcagatgttgtgtcttacaagttcaggaggaagtcaaaacccaag
gtagcccaaagtgacaagatgcccagcgctcatgccgctccctcctccacccttagccct
gtgtccgatgtggctgggggggatgaggacagtctgagcgctgcggatagaggagacggg
gagcttggttcagagctgttgggttctgagtctgtcttggagctgccctcagttgaaaac
ctctcgagtgtcagcttgcccgtgtcttctttgtttgcgggtaacgacatggaagtattt
catcccccttcatcctctgcaacttcagccgtcaaggaagtcagtttggctgctctgttg
gaagaaactcctgaatgcaggcgttcagctctcgtggaaatctgtagtaatgaaactgtg
gctgtgtcttcttacaaagtctggaaggatgagtgtttattgctggtgtgctcagtcact
agtaagactgattcagagttcacagatgctcaattagaaatttttcctttggaaaatttc
aagatcattgagcagcctggatgtccttcacctgtgatggaagcagaaagcaccaaatcc
ttccaatatggcgtgcagatggaaagcccttgtgtagaggggactctctctggttttata
aagtatcaaatgatggatacacatcctgttcaactggaattttccatgaacttatcacta
ctagattttattaggccattaaagatctcaactgaagactttggcaaactctggttgtct
tttgcaaatgatgtgaagcaaaatataaaaatatcagagcctcgagttgcactggcttct
gtcctgacagagctgcagcagaaactcagactttgcgtggttgacgtcataggcagtgaa
ggtctgctggcctgtaagctgcttccgtccaccccctgtatcctgcactgccgagtacac
gctgacgtggtagccctgtggttccgatcctctagctctgttctttcagactgtttatct
tgtcactgtcagaaagtgatgcagacatcctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (5)   
   Pfam (5)   
All databases (24)   

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KEGG   Rattus norvegicus (rat): 366618
Entry
366618            CDS       T01003                                 

Gene name
Ap4s1
Definition
(RefSeq) AP-4 complex subunit sigma-1
  KO
K12403  AP-4 complex subunit sigma-1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04142  Lysosome
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome
    366618 (Ap4s1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rno04131]
    366618 (Ap4s1)
Membrane trafficking [BR:rno04131]
 Endosome - Golgi transport
  Others
   AP-4 complex
    366618 (Ap4s1)
SSDB
Motif
Pfam: Clat_adaptor_s
Other DBs
NCBI-GeneID: 366618
NCBI-ProteinID: NP_001124471
RGD: 1311990
Ensembl: ENSRNOG00000005765
UniProt: B0BN62 F1M5X2
Position
6
AA seq 144 aa
MIKFFLMVNRQGQTRLSKYYEHVDINKRALLETEVSKSCLSRSSEQCSFIEYKDFKLIYR
QYAALFVVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLN
GCIVETNRARILAPLLILDKMSES
NT seq 435 nt   +upstreamnt  +downstreamnt
atgatcaagttcttccttatggtgaacagacaagggcagacccggctgtctaagtactat
gagcatgtagacattaataaacgtgcacttctggaaaccgaggtcagcaagagctgcctg
tcccgatccagtgaacaatgctcgttcattgaatacaaggatttcaaattgatctaccgg
caatacgcagctctctttgttgtggttggagttaatgacacggagaatgagatggctatc
tatgaattcatacacaattttgtggaagttttagatgaatacttcagcagagtgagtgaa
ctagatataatgtttaatttggacaaagtccacatcattttggatgagatggtgttaaat
ggctgcattgtggaaactaacagagcaagaattcttgccccgctactgattcttgacaag
atgtcggagagctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (9)   
   RefSeq(nuc) (1)   
   GenBank (4)   
   EMBL (4)   
Protein domain (1)   
   Pfam (1)   
All databases (23)   

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