KEGG   Rattus norvegicus (rat): 306274
Entry
306274            CDS       T01003                                 
Symbol
Ercc6
Name
(RefSeq) DNA excision repair protein ERCC-6
  KO
K10841  DNA excision repair protein ERCC-6
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    306274 (Ercc6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    306274 (Ercc6)
   03400 DNA repair and recombination proteins [BR:rno03400]
    306274 (Ercc6)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    306274 (Ercc6)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Other TCR factor
      306274 (Ercc6)
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C HDA2-3 DEAD
Other DBs
NCBI-GeneID: 306274
NCBI-ProteinID: NP_001100766
RGD: 1311509
Ensembl: ENSRNOG00000030017
UniProt: A6KFV6 D3ZS47
Position
16:7771311..7841895
AA seq 1325 aa
MPHEEIPNSTQPQGQDWLPGQHVSADRDIPAGQETAGDSEAGKCLSSPSCDHGPSTSAEA
CVLAATRWGPALLHIDRHQIPAVEPSAQALELQGLGVDVYDQAVLEEGVLQQVDSAMHEA
SRVAQRADAEKEYQSVLDDLMSCTTSLRQINKIIEQLSPQAASNRDINRKLDSVKRQKYN
KEQQLKKITAKQKRLQAILGGAEVHVELDHGSLEEEDAEPGPSCLGSMLMPAQESAWEEL
IRTGQMTPFGTPAPQKQEKKPRKIMLNEASGFEKYLADQAQLSFKRKKQAANKRTAKKAV
VVSESSRGPNETKPNQRSQALSQTDKRLKKHIRKLQRRALQFQGKVGLQRGKRPLEPEER
PGAEGDTEAVLSSDDISYELKPLRKGQKYEKKVPVQEIDDDFFPSSEEEDEAVEGRGGGR
KVSRRPDDGDEDYYKQRLRRWNRLRLQDKEKLKLEDDSEESDAEFDEGFKVPGFLFKKLF
KFEGLGPTLIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSCAHRKERLVRDIVHCHGVL
ITSYSYIRLMQDDISRHDWHYVILDEGHKIRNPNAAVTLACKQNNLRELWSLFDFTFPGK
LGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVKMSLSL
PDKNEQVLFCRLTDEQHKVYQNFIDSKAVYRILNGENQIFSGLVALRKICNHPDLFSGGP
KNTSALPEDGLEEEQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLHILEVFLR
AHKYSYLKMDGTTTIASRQPLITKYNEDTSIFVFLLTTRVGGLGVNLTGANRVIIYDPDW
NPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFF
KSNDLYELFTLTSPDASQGTETSAIFAGTGSNIQTLKCHFKKRTPPVLQMDPKRKKPLVS
DTSVNGATVMEEKSQGSGATGSVPSTESGPLKSDRHTDGSRASSVGFGEEADAGSTLEHL
SGLSGDSPAVDHTSRLSAVASTSEKQGSSYEGECCQAQTGPVHLSEQTEGHFSKHKSKRK
HDAAEEETTEKCPQPKQKAKNSRHHRDAKFEGTRVPHLVKKRRYHQQTTEQESGAKDRSS
DDYVLEKLFKKSVGVHSVVKHDAIIDGSSPDYVLVEAEANRVAQDALKALRLSRQQCLGA
TSGVPTWTGHRGISGAPAGVKMRARNHMILPERLESDGEQLAGAAAAAAPPCSTEHDALL
VDMRNFIAFQAQVDGQASTQEILQAFESKLSVAQSCVFRELLRNLCNFHRTPGGEGIWKL
KPEYC
NT seq 3978 nt   +upstreamnt  +downstreamnt
atgccccatgaggaaatccccaactccactcaacctcagggccaagactggttaccaggt
cagcatgtcagtgctgacagagacataccagctgggcaggagactgctggggactcagag
gcggggaagtgcctctcctctccttcctgtgaccatgggccgtccacatctgctgaagct
tgtgtactggcagccacaaggtgggggcccgccctgctgcacatcgaccggcatcagatt
cctgcggtggagcccagtgctcaggccctggagctgcagggcctgggtgtggacgtctac
gaccaggccgtcctggaggaaggtgtgcttcagcaggtggacagtgcaatgcatgaggcc
agccgtgtggcccagcgtgctgatgcggagaaagagtatcagtcagtcctggacgacctc
atgtcatgtacaacatccctgaggcaaatcaataaaattatagagcaacttagccctcaa
gctgccagcaacagagacatcaacaggaaactagattctgtgaaacgacagaagtacaac
aaggaacaacagctaaagaagataactgcaaaacagaaacgtctccaggccattctcgga
ggagcggaggtccatgtggaactggatcatggcagcttagaggaggaagatgcagagcca
ggcccatcatgtctcggcagtatgctcatgcctgcccaggagagcgcctgggaagaactt
atccgcactggccagatgacaccgttcggtaccccagcccctcagaaacaggagaaaaag
cctagaaaaataatgctcaatgaagcatcaggctttgaaaaatatttggcagaccaagca
caactttcttttaaaaggaaaaaacaagctgctaataaaagaacagctaaaaaagctgtg
gttgtatctgagtcaagccgaggaccaaatgaaactaagccaaaccagagaagccaagcg
ctctctcagacagacaagcgcctgaagaagcacatcaggaagctccagaggagggcgctg
cagttccagggcaaagtgggattgcaaagggggaagagacctctggagcctgaggagagg
ccaggggcagagggagacactgaggccgttctgtcttccgatgacattagctatgaactg
aagcctcttcggaaaggacaaaaatacgagaagaaagtcccagtgcaggagatcgacgat
gacttctttccaagttctgaggaggaagatgaagctgtggaaggaagaggaggaggccgc
aaggtctccaggcgcccagacgatggagatgaggattattataaacaacgattaaggagg
tggaataggctgaggctgcaggacaaagagaagctgaagcttgaagacgattctgaggag
agcgatgctgagtttgacgaaggtttcaaagtgccgggttttctgttcaaaaagctcttt
aagttcgagggactcggccccactctcattgtctgcccaacgacagtgatgcatcagtgg
gtgaaagaattccacacgtggtggcctccattcagagtggcgattctgcacgaaacaggc
tcctgtgcccacagaaaggagaggctggttcgagatattgttcattgtcatggagttttg
ataacttcgtattcctacattcgactgatgcaagacgacattagcaggcatgactggcac
tacgtcatcttagacgaaggacataaaattcgaaatccaaatgctgcagtcacccttgct
tgcaaacagaataacctgcgagagctgtggtcactcttcgactttaccttcccaggaaag
ctaggcacgttgcctgtgttcatggagcagttctctgtccccatcaccatgggggggtac
tccaatgcttccccagtacaggttaaaactgcctataagtgtgcgtgtgtcttgagagac
acgataaacccgtacctactgcgaagaatgaaatcagatgtcaagatgagcctttcgctg
ccagataaaaatgaacaggtcttattttgccgtctaactgatgagcagcataaagtctac
cagaatttcatcgattccaaagcagtttacaggattctcaatggagagaatcagattttc
tctggacttgtagctctgaggaagatctgcaaccaccctgacctcttttctggcggtccc
aagaacaccagtgctcttccagaggatggactggaggaggagcagttcggatactggaaa
cgctctgggaaaatgattgttgttgagtctttgctgaaaatctggcacaagcagggtcag
cgggtgctgctgttttcccagtcaaggcagatgctgcacatactggaagtgttcctgaga
gcccacaagtattcctatctcaagatggatgggaccactaccatagcatccaggcagccg
ctgattacaaaatacaatgaggacacgtccatctttgtctttcttctgaccacacgggtg
ggcggcttaggagtgaacctgaccggggccaacagagtcatcatctacgaccctgactgg
aatccaagcaccgacacacaggcacgggagcgagcatggaggatcggccagaagaagcag
gtgactgtctacaggcttctgacggccggcaccatagaggaaaagatctatcaccgacaa
atcttcaagcaatttttgacaaacagagtgctaaaagaccctaaacaaaggcgctttttc
aagtccaatgatctctatgagctgtttactctgactagtcctgatgcctcccagggcact
gaaacaagtgctatttttgcaggaaccggatctaatattcagacactgaaatgccatttt
aaaaagaggactccgccagtcctacaaatggatcccaaacgcaagaagcccctggtttct
gacacatctgtaaatggtgccactgtgatggaagaaaaatctcaggggtcaggagctacg
ggcagtgtcccttctacagaaagtggccctttgaaaagtgaccgtcacacagatgggagc
agagccagcagtgttggttttggagaagaggcagatgcagggtccacgctggagcatctc
tcagggctgagtggagattctccagcagttgaccacacatccaggctgtcagctgtggcg
agcaccagtgagaagcagggctcttcctatgaaggggagtgctgccaggctcagacggga
cctgttcacctgagtgaacaaacggaaggtcatttctctaagcacaaatcaaaaaggaaa
catgatgcagcggaggaagagaccacagagaagtgtccacagcccaagcaaaaggccaag
aactccaggcatcacagagatgctaagtttgagggaactcgagtcccacacctggtgaag
aagaggcggtaccatcagcaaaccactgagcaggagagcggagccaaggaccggagcagt
gatgattatgttttggaaaagcttttcaaaaaatcagtgggcgtgcacagcgtcgtgaag
catgatgccatcatagatgggtccagtccggattatgtgctggtggaggcagaagccaac
agagtggctcaggatgccttgaaagctctgaggctctctcgtcagcagtgcctgggggca
acatctggtgttcccacctggactggccacaggggtatttccggtgcaccagcaggagta
aaaatgcgagcacgaaaccacatgattttgccggagcgtttggagagtgacggcgagcag
cttgctggggctgcggctgcggctgcgcctccctgcagcacagagcacgacgcccttctg
gtggacatgaggaacttcattgctttccaggctcaggtggatggccaggccagcactcag
gaaatcctacaggcgttcgaatccaagctgtctgtggcacagtcctgtgtcttccgagaa
ctactgaggaatctgtgcaatttccatagaactcctggtggtgaagggatttggaaactg
aagccagagtactgctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (8)   
   UniProt (2)   
   RefSeq(pep) (6)   
DNA sequence (6)   
   RefSeq(nuc) (6)   
Protein domain (4)   
   Pfam (4)   
All databases (29)   

Download RDF
DBGET integrated database retrieval system