KEGG   Rattus norvegicus (rat): 308598
Entry
308598            CDS       T01003                                 
Symbol
Hps5
Name
(RefSeq) BLOC-2 complex member HPS5
  KO
K20191  Hermansky-Pudlak syndrome 5 protein
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rno04131]
    308598 (Hps5)
Membrane trafficking [BR:rno04131]
 Endosome - Lysosome transport
  Others
   BLOC-2 complex
    308598 (Hps5)
SSDB
Motif
Pfam: TPR_HPS5 Beta-prop_HPS5 WD40_WDHD1_1st Beta-prop_EML_2 PEP5_VPS11_N Beta-prop_RIG_2nd Beta-prop_Vps41 WD40_CDC20-Fz Beta-prop_RIG_1st Beta-prop_IFT140_2nd Beta-prop_RSE1_2nd WDR55 Beta-prop_VPS8
Other DBs
NCBI-GeneID: 308598
NCBI-ProteinID: NP_001129084
RGD: 1311916
Ensembl: ENSRNOG00000055531
UniProt: F1LS35
Position
1:complement(106417902..106457220)
AA seq 1126 aa
MTSVPVIPEAYSHVLAEFESLDPLLTALRLDSSRLKCSSIAVSRKWLALGSTGGGLNLIQ
KDGWKQRLFLSHREGAISQIACCSHDDDYVAVATSQGLVVVWELNQERRGKPERIHVSSE
HKGRKVTALCWDTAVLRVFVGDHVGKVSAIKLNTLKQAKAAAAFVMFPVQTIITVDSCVV
QLDYLDGRLLVSSLTRTFLCDTEREKFWKIGNKEREGEFGACFFPGRCAGSQQPLIYCAR
PGSRIWEVSFDGEVLSTHQFKKLLSMPPLPVITASSEPQYDHAVGSSQSLSFPKLLHFSE
HCVLTWTEKGIYIFIPQNVQVLLWSEVKDIQDVAVYKNELFCLHFNGKISHLSLLSVERC
VERLLRRGLWDLAARTCCLFQNSIITSRGRKTLSTDKLEHLKSQLDLTACSELISQLEEV
IFKFEPLDSACSSRRSSISSHESFSILDSGIYRIISSRRGSQSDEDSCSLHSQTFSEDER
LKEFASHQEEEQPEQGCCANRNGDSVSHSPMMSEIDKGEAFLPFNIPLPFRSPSPLLSLQ
AVKDSVSSFVRKTTEKIGTLHASPELKETSEPRDADQVHEEEVSAVTCPLEEDTEEKEIH
QPPEEDRLQGLRAATAEAVTKLLDPLVLFEPKLLRAVLHEWLSQLEKTFAMKGFAAISNT
SSLPEKSNLDTHLLGESEKRVLCEESGEERRVTLGTEEPGGQTTCDSVSSLSEPSADSFQ
VCPPYAIANSLQKDLVELTTLCLELNVLTSAVESDSRHMDCALQQLSPETLACRFLKKYF
FLLDLKRAKESVKLSHYSPCVWDTFVEGLKEMASSTPAYMEMGERDLPTGLQLLDGSVPS
HSPLLIAFAARLYDRFGEPALRALIKFYPSISPSDIAQLCRRHPAQFLAYLDSLVKSRPE
DQWPSFLEFLLQPESLRLEWLLLAVSHDAPPSTSTVDDEGHPRPHSHLLSWGYSQLILLL
IKLPADFATKEKMTDICRSYGFWPGYLTLCLELERRREAFTNIVYLNDVSLMEGDNGWIP
ETLEEWKLLLHLLQNKNTRPAPQESLNGSLSDGPTPINVENVALLLAKAMGPDRAWSLLQ
ECGLALELSEKFTRTCDILRIAERRQRALIQGMLEKCDRFLWSQQA
NT seq 3381 nt   +upstreamnt  +downstreamnt
atgacttctgtgcccgtgataccagaagcctacagccatgttcttgcagagtttgagtcc
ttggacccgttactcacagccctgcggctggactccagtcgtctgaagtgttccagcata
gctgtgtctcggaaatggctggccttaggcagcacaggaggaggactcaatctcattcag
aaagatggctggaagcaaaggctgtttctctcccaccgggaaggggcaatctctcagatt
gcctgctgctctcatgatgatgattatgttgccgtggctaccagtcaaggtcttgtagtt
gtttgggaattaaatcaagagcgtcgtgggaaaccagagcgaatccatgtgtcctcagaa
cacaaaggccgaaaagttaccgccctttgttgggacacagctgtcctgagagtctttgta
ggtgaccacgtgggcaaagtttctgccatcaaactcaatactttgaaacaagcaaaggca
gctgcggcctttgtgatgtttcctgtccagacaataataacagtcgactcctgtgtcgtc
cagttagattatttggatggaagattacttgtgtcttcactgactcgaaccttcttgtgc
gacactgagagggaaaagttttggaagattggaaataaggaaagagaaggagagtttggg
gcgtgtttcttccctggaaggtgtgctgggagccagcagcctctgatctactgtgcccgc
ccaggctccaggatatgggaagtgagctttgatggggaagtgctcagtacacaccagttc
aagaagctcctctcaatgccgccccttcctgtcatcactgcaagctcggagcctcagtat
gatcacgcagttgggtcctcccagtctttatcgttccccaaactcttgcattttagtgaa
cactgtgtgctgacttggacagaaaagggaatttatattttcattcctcagaatgttcaa
gttcttctttggagtgaagtcaaggatattcaggatgtagctgtctacaagaatgaattg
ttctgtttgcactttaatgggaaaatctcacatctttccctgttgtctgtggaacgctgt
gtagaacgcctgttaaggagaggcctgtgggacctggctgctcgcacatgctgtctcttc
caaaactctattattaccagcagaggaagaaaaacactgtctacagataaattggagcat
ttgaaatctcagctggaccttacagcctgcagtgaactaatttctcagctggaagaagtg
atcttcaagtttgagcctttggattcagcttgcagcagcagaagaagctccatttcgtca
catgaaagttttagcatcttggactctggtatttatcgtatcatcagtagtagaagaggc
agtcagtccgacgaagattcttgctcccttcacagccagaccttctcagaagacgagaga
cttaaagaatttgcatcacaccaggaagaggagcagccagagcagggctgttgtgcaaac
agaaatggagacagtgtttcccacagtccaatgatgtctgagatagataagggggaagcg
tttctgcccttcaacattccactgccatttcgttctccttctcccctcctgtctcttcag
gctgttaaggacagtgtttctagctttgtgcgtaagactactgagaagattggcaccctt
catgcaagcccagagctgaaagagacatcggaacccagggatgctgaccaagttcatgaa
gaggaagtgagtgccgtcacctgccctctggaggaggacactgaggagaaagaaatccat
caacctcctgaagaagacaggcttcagggactcagagcagcgacagcagaagcagtgacc
aagttactggaccccctggttttgtttgaacccaagttgctaagagcggttttacacgag
tggctttcacagttagaaaaaacatttgccatgaaaggctttgctgccatttccaacacc
agcagtctacccgagaaatcgaacctggatacgcacctcctcggtgagtcagaaaaaaga
gtattatgtgaagagagtggagaagaaagaagggtcaccttaggcactgaagaacctggc
ggtcagacaacctgtgactctgtaagcagcctgagtgagccctcggccgacagttttcaa
gtctgtcctccttacgccatagcaaacagccttcagaaggacctggtggaattgacaacg
ttgtgcttggaactgaacgtgttgacctctgcggtggaaagcgatagtagacacatggac
tgtgctttgcagcagctctctccagagaccctggcttgtcgtttcctgaagaagtacttt
tttctcctggacttgaaaagggcaaaggagagtgtcaagcttagtcactacagcccctgt
gtttgggacacttttgttgaaggactaaaagaaatggcaagttctactcctgcctacatg
gagatgggagaaagagacctgcccaccgggttacagttgctggatggctccgtcccttcc
catagtcccctgctgattgcctttgccgcccggctgtatgacagatttggggagcctgcc
cttcgagccttgatcaagttttacccgtccatctcaccttccgacattgcgcagctttgc
cgtcgtcatccggctcagtttttggcctatctggacagtctggtgaagtccaggcccgag
gaccagtggccatccttccttgagttccttctacaaccagaatctttaagacttgaatgg
ctgcttttggcagtgtcccatgatgctccaccaagcacaagtacagtggatgatgaagga
catcccaggccccattcacacctgctttcttggggttatagccagctgattcttcttctg
attaaacttcctgcagactttgcaaccaaagagaaaatgactgacatctgtaggtcttat
ggtttctggcctggatatcttaccctctgtctggagctggagaggaggagggaggccttc
accaacattgtgtatctgaatgatgtcagcctgatggaaggggacaatgggtggatccct
gagaccttggaggaatggaagcttctcctacatctactacagaacaagaacacaaggcca
gctcctcaggagtcactaaatgggagcctcagtgatgggcctacccccatcaatgtggag
aatgtggcactcctgttagctaaggccatgggcccagatagggcctggtcactgctacag
gagtgcggtctggcccttgagttgtcagaaaagtttaccagaacctgtgacatcctgagg
attgctgagagaaggcagagagcgctgatacaaggcatgcttgagaagtgcgaccggttc
ctctggtcacagcaggcctag

  All links  
Gene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (13)   
   Pfam (13)   
All databases (23)   

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