KEGG   Rattus norvegicus (rat): 309607Help
Entry
309607            CDS       T01003                                 

Gene name
RT1-CE5, RT1-C/E5, RT1-E2, rt1-El
Definition
(RefSeq) RT1 class I, locus CE5
  KO
K06751  MHC class I antigen
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04144  Endocytosis
rno04145  Phagosome
rno04218  Cellular senescence
rno04514  Cell adhesion molecules (CAMs)
rno04612  Antigen processing and presentation
rno04940  Type I diabetes mellitus
rno05163  Human cytomegalovirus infection
rno05165  Human papillomavirus infection
rno05166  Human T-cell leukemia virus 1 infection
rno05167  Kaposi sarcoma-associated herpesvirus infection
rno05168  Herpes simplex virus 1 infection
rno05169  Epstein-Barr virus infection
rno05170  Human immunodeficiency virus 1 infection
rno05203  Viral carcinogenesis
rno05320  Autoimmune thyroid disease
rno05330  Allograft rejection
rno05332  Graft-versus-host disease
rno05416  Viral myocarditis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules (CAMs)
    309607 (RT1-CE5)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    309607 (RT1-CE5)
   04145 Phagosome
    309607 (RT1-CE5)
  09143 Cell growth and death
   04218 Cellular senescence
    309607 (RT1-CE5)
 09150 Organismal Systems
  09151 Immune system
   04650 Natural killer cell mediated cytotoxicity
    309607 (RT1-CE5)
   04612 Antigen processing and presentation
    309607 (RT1-CE5)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    309607 (RT1-CE5)
  09163 Immune disease
   05320 Autoimmune thyroid disease
    309607 (RT1-CE5)
   05330 Allograft rejection
    309607 (RT1-CE5)
   05332 Graft-versus-host disease
    309607 (RT1-CE5)
  09166 Cardiovascular disease
   05416 Viral myocarditis
    309607 (RT1-CE5)
  09167 Endocrine and metabolic disease
   04940 Type I diabetes mellitus
    309607 (RT1-CE5)
  09172 Infectious disease: viral
   05166 Human T-cell leukemia virus 1 infection
    309607 (RT1-CE5)
   05170 Human immunodeficiency virus 1 infection
    309607 (RT1-CE5)
   05168 Herpes simplex virus 1 infection
    309607 (RT1-CE5)
   05163 Human cytomegalovirus infection
    309607 (RT1-CE5)
   05167 Kaposi sarcoma-associated herpesvirus infection
    309607 (RT1-CE5)
   05169 Epstein-Barr virus infection
    309607 (RT1-CE5)
   05165 Human papillomavirus infection
    309607 (RT1-CE5)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:rno04147]
    309607 (RT1-CE5)
   00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:rno00537]
    309607 (RT1-CE5)
Exosome [BR:rno04147]
 Exosomal proteins
  Proteins found in most exosomes
   309607 (RT1-CE5)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:rno00537]
 Antigens
  309607 (RT1-CE5)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: MHC_I C1-set MHC_I_C Ig_3 ig C2-set_2 Ig_2
Motif
Other DBs
NCBI-GeneID: 309607
NCBI-ProteinID: NP_001008843
RGD: 1595868
Ensembl: ENSRNOG00000000723
Vega: OTTRNOG00000001808
UniProt: Q95II0 Q861Q0 Q861J1
Position
20p12
AA seq 370 aa AA seqDB search
MGAMAPRTLLLLLAAALAPTRTRAGSHSLRYFHTAVSRPGLGEPRFIIVGYVDHTEFVRY
DSDAENPRYEPRARWMEREGPEYWEQQTQIVKGHEWSFRVSLRNLLGYYNQSEGGSHTLQ
VMSGCDMGSDQSLRRGYEQYAYDGRDYISLNEDLKTWSAADLAAQITLNKWDQAGELDYY
KAYLEGPCLEWLLRYLEHGKETLMRSDPPKAHVTLHPRPEGDVTLRCWALGFYPADITLT
WQLNGEDLTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCLVEHEGLPEPLTFRWEA
PPSTNSNTGMSVILGTVTIIAVMAIIVVVAVIRTVVRKRWIKTGGKGVYTPAPGRDSSQS
SDVSLPDCKA
NT seq 1113 nt NT seq  +upstreamnt  +downstreamnt
atgggggcgatggcaccgcgcacgctgctcctgctgctggcggcggccctggccccaacc
cggacccgcgcgggctcacactcgctgcggtatttccacaccgccgtgtcccggcccggc
ctcggggagccccggttcattatcgtcggctatgtggaccacacggagttcgtgcgctac
gacagcgacgcagagaatccgagatacgagccgcgggcgcggtggatggagcgggagggg
ccggagtattgggagcagcagacacagatcgtcaagggacacgaatggagtttccgagtg
agcctgaggaatctgctaggctactacaaccagagcgagggcggctctcacacactccag
gtgatgtctggatgtgacatggggtcggaccagagcctgcgccgcgggtatgagcaatac
gcctatgacggccgcgattacatctccctgaacgaagacctgaagacgtggtcggctgcg
gacttggcagcacagatcactctaaacaagtgggatcaggctggtgaattagactattac
aaggcctacctggagggtccatgcctggagtggcttctcagatacctggagcacgggaag
gagacactgatgcgctcagatcccccaaaggcacatgtgacccttcaccccagacctgaa
ggtgatgtgaccctgaggtgctgggccctgggcttctaccctgctgacatcaccctgacc
tggcagttgaatggggaggacctgacccaggacatggagcttgtggagaccaggcctgca
ggggatggaaccttccagaagtgggcatctgtggtggtgcctcttgggaaggagcagaat
tacacatgccttgtggagcatgaggggctgcctgagcccctcacctttagatgggaggct
cctccctccaccaactccaacacgggaatgtctgttattcttggaactgtgaccatcatt
gcagttatggccatcattgtagttgtagccgtcattagaactgttgtgaggaagagatgg
ataaaaacaggtggaaaaggagtctacacccctgctccaggcagggacagctcccagagc
tctgatgtgtctctcccagattgtaaagcatga

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