KEGG T01003: 312896

Rattus norvegicus (rat): 312896

Entry

312896            CDS       T01003

Symbol

Trpa1

Name

(RefSeq) transient receptor potential cation channel subfamily A member 1

K04984

transient receptor potential cation channel subfamily A member 1

Organism

rno Rattus norvegicus (rat)

Pathway

rno04750

Inflammatory mediator regulation of TRP channels

Brite

KEGG Orthology (KO) [BR:rno00001]
09150 Organismal Systems
  09157 Sensory system
   04750 Inflammatory mediator regulation of TRP channels
    312896 (Trpa1)
09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04040 Ion channels [BR:rno04040]
    312896 (Trpa1)
Ion channels [BR:rno04040]
Voltage-gated cation channels
  Transient receptor potential channel (TRP)
   312896 (Trpa1)

SSDB

Motif

Pfam:

Ank_2 Ank Ank_4 Ank_3 Ank_5 Ion_trans ANK_LRRK2 SchA_CurD

Other DBs

NCBI-GeneID:

NCBI-ProteinID:

RGD:

Ensembl:

UniProt:

Position

5:9163060..9217325

AA seq 1125 aa
MKRSLRRVLRPEERKEVQGVVYRGVGEDMDCSKESFKVDIEGDMCRLEAFIKNRRKLSKY
EDENLCLLHHAAAEGQVELMQLIINGSSCEALNVMDDYGNTPLHWAAEKNQVESVKFLLS
QGANPNLRNRNMMAPLHIAVQGMYNEVIKVLTEHKATNINLEGENGNTALMSTCAKDNSE
ALQILLEKGAKLCKSNKWGDYPVHQAAFSGAKRCMELILAYGEKTGYSREAHINFVNHKK
ASPLHLAVQSGDLDMIKMCLDSGAHIDMMENAKCMALHFAATQGATDIVKLMISSYTGSS
DIVNAVDGNQETLLHRASLFDHHDLADYLISVGADINSTDSEGRSPLILATASASWNIVN
LLLSKGAKVDIKDHLGRNFLHLTVQQPYGLRNLRPEFLQMQHIKELVMDEDNDGCTPLHY
ACRQGAPVSVNNLLRFNVSVHSKSKDKKSPLHFAASYGRINTCQRLLQDISDTRLLNEGD
LHGMTPLHLAAKNGHDKVVQLLLKKGALFLSDHNGWTALHHASMGGYTQTMKVILDTNLK
CTDRLDEEGNTALHFAAREGHAKAVAMLLSYNADILLNKKQASFLHIALHNKRKEVVLTT
IRSKRWDECLQVFTHDSPSNRCPIMEMVEYLPECMKVLLDFCMIPSTEDKSCQDYHIEYN
FKYLQCPLSMTKKVTPTQDVIYEPLTILNVMVQHNRIELLNHPVCREYLLMKWCAYGFRA
HMMNLGSYCLGLIPMTLLVVKIQPGMAFNSTGIINETISTHEERINTLNSFPLKICMILV
FLSSIFGYCKEVVQIFQQKRNYFLDYNNALEWVIYTTSMIFVLPLFLDIPAYMQWQCGAI
AIFFYWMNFLLYLQRFENCGIFIVMLEVIFKTLLRSTGVFIFLLLAFGLSFYVLLNFQDA
FSTPLLSLIQTFSMMLGDINYRDAFLEPLFRNELAYPVLTFGQLIAFTMFVPIVLMNLLI
GLAVGDIAEVQKHASLKRIAMQVELHTNLEKKLPFWYLRKVDQRSTIVYPNRPRHGRMLR
FFHYFLSMQETRQEAPNIDTCLEMEILKQKYRLKDLTSLLEKQHELIKLIIQKMEIISET
EDEDNHCSFQDRFKKERLEQMHSKWNFVLNAVKTKTHCSISHPDI

NT seq 3378 nt +upstreamnt +downstreamnt
atgaagcgcagcttgaggagggttctgcgccccgaggaaagaaaggaggtccagggcgtc
gtctatcgcggcgtgggggaagacatggactgctccaaggaatcctttaaggtggacatt
gaaggagatatgtgcagattagaagccttcatcaagaaccgaagaaaactaagcaagtac
gaggatgaaaatctctgtcttctgcatcacgccgcagccgaaggtcaagttgaactgatg
caattgatcatcaatggctcttcctgtgaagcgctgaatgtaatggatgattatggaaat
accccactacattgggctgcagaaaaaaatcaagttgaaagtgtgaagtttcttctcagc
caaggagcaaatccaaacctccgaaatagaaacatgatggcaccccttcacatagctgta
cagggcatgtacaacgaagtgatcaaggtcttgaccgagcacaaggccactaacatcaat
ttagaaggagagaatgggaacacagctttgatgtccacgtgtgccaaagacaacagtgaa
gctttgcaaattttgttagaaaaaggagctaagctgtgtaaatcaaataaatggggagac
taccctgtgcaccaggcagcattttcaggtgccaaaagatgcatggaattaatcttagca
tatggtgaaaagaccggctatagccgggaggctcacattaactttgtgaatcataagaaa
gccagccctctccacctcgcagttcagagcggcgacttggacatgattaagatgtgcctg
gacagcggtgcacacatcgacatgatggagaatgccaaatgcatggccctccattttgct
gcaacccagggagccactgacatcgttaaactcatgatctcatcctatactggaagcagc
gatatcgtgaatgcagtcgatggcaatcaggagaccctgcttcacagagcctcattattt
gatcatcatgacctggcagactacctaatttcagtgggagcagacatcaacagcactgat
tctgaaggacgctctccacttattttagcaactgcttctgcatcctggaatattgtgaat
ttgctcctctctaaaggtgccaaagtagacataaaagatcatcttgggcgtaacttttta
catttgactgtgcagcagccttatgggctaaggaatttgcggcctgagtttttgcagatg
caacacatcaaggagctggtgatggatgaggacaatgatggatgtacgcctctccattat
gcttgtaggcagggggcccctgtctctgtaaataacctcctcaggttcaatgtgtccgtt
cattccaaaagcaaagataagaagtctcccctgcactttgccgccagctatgggcgcatc
aatacatgtcagaggcttctgcaagacatcagcgacacaaggcttttgaatgaaggggat
ctccatggaatgacccctctccatctggcagcaaagaatggacatgataaagtcgttcaa
cttcttctcaagaaaggggccttgtttcttagtgaccacaatggctggactgctttgcat
catgcgtccatgggtggctacactcagaccatgaaggtcattcttgacactaacttgaag
tgcacagaccggctagatgaagaagggaacacagcacttcactttgcagcacgggaaggc
catgcaaaggctgttgcgatgcttttgagctacaatgctgacatcctcctgaacaagaag
caagcttcctttctgcatattgcactgcacaataagcgcaaggaagtggttctcacaacc
atcaggagtaaaagatgggatgagtgtcttcaagtttttactcatgattctccaagcaat
cgctgtccaatcatggaaatggtggaatacctccccgagtgcatgaaagttcttctagat
ttctgcatgataccttccacagaagacaagtcctgccaagactaccatattgagtataat
ttcaagtatctccaatgcccattatccatgaccaaaaaagtaacccccacccaggatgtg
atctatgagcctcttacaatcctcaatgtcatggtccaacataaccgcatagagctcctc
aaccaccctgtgtgtagggaatacttacttatgaaatggtgtgcctatggcttcagagct
catatgatgaacctaggatcttattgtcttggtctcatacccatgacccttcttgttgtc
aaaatacagcctggaatggccttcaattctactggaataatcaatgaaactattagtact
catgaggaaagaataaacactctgaattcgtttccattaaaaatatgtatgattctagtt
tttttatcaagtatatttggatattgcaaagaagtggtccaaattttccaacagaaaagg
aactactttctggactacaacaatgctctggagtgggtcatctacaccaccagtatgatc
ttcgtgttgcccttattcctcgacatccccgcgtatatgcagtggcaatgtggagcgata
gcaatattcttctactggatgaacttcctactatatcttcaaaggtttgagaactgtggc
attttcattgttatgttggaggtgatttttaaaacattgctgagatcgacgggagtgttt
atcttcctgctattggcttttggcctcagcttttacgtcctcctgaatttccaagatgcc
ttcagcaccccgttgctttccttaatccagacgttcagtatgatgctgggagacatcaat
taccgagatgctttcctagaaccgttgttcaggaatgagttggcatacccggtcctcacc
tttgggcagcttattgccttcacaatgttcgtcccaattgttctcatgaacctactgatt
ggtttggcagttggggacattgctgaggtccagaagcatgcatcattaaagaggattgct
atgcaggtggaactgcataccaacttagaaaaaaagctgccattctggtacttgcgcaaa
gtggatcagaggtccaccatcgtgtatccgaatagacccaggcacggcaggatgctgcgg
ttttttcattactttcttagtatgcaagaaacacgacaagaagcaccaaacattgacaca
tgtttggaaatggaaatactgaaacagaaataccggctgaaggacctcacttctcttttg
gaaaagcagcacgagctcatcaaactcatcatccaaaagatggagatcatctcggagaca
gaagatgaagataaccattgctctttccaagacaggttcaaaaaggaacggctagaacaa
atgcatagcaaatggaactttgtcttaaacgcagttaagactaaaacacattgttctatt
agccacccagacatctag

All links

Gene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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