KEGG   Rattus norvegicus (rat): 313243
Entry
313243            CDS       T01003                                 
Symbol
Exosc3
Name
(RefSeq) exosome complex component RRP40
  KO
K03681  exosome complex component RRP40
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    313243 (Exosc3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    313243 (Exosc3)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     313243 (Exosc3)
SSDB
Motif
Pfam: RRP40_S1 RRP40_N_mamm KH_6 RRP4_S1 Rrp40_N
Other DBs
NCBI-GeneID: 313243
NCBI-ProteinID: NP_001101406
RGD: 1304739
Ensembl: ENSRNOG00000012409
UniProt: A6IJ93
Position
5:complement(64369495..64374711)
AA seq 282 aa
MAEVSAGAESVAGCRARAVHKVLNQVVLPGEELVLPDHEDADGLGGPGEQPLRLNAGARP
RLRIVCGPGLRRCGDRLLVTKCGRLRHKEPSGGGGGGGGGGGGGGVYWVDSQQKRYVPVK
GDHVIGIVVAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQCVVANKD
MEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIVQELGKLYPLEIVFGM
NGRIWVKAKTIQQTLILANVLEACEHMTTEQRKQIFARLAES
NT seq 849 nt   +upstreamnt  +downstreamnt
atggctgaagtgtccgctggggctgagtctgtggcgggctgccgagcacgggcagtgcac
aaggtgctaaatcaggtggttctccctggggaggagctggtgctgccggaccacgaggac
gcagacggccttgggggccccggggagcagccgttacgcctgaatgcgggagcgcgcccg
aggctgcgcatagtatgcggcccgggtttgcgacgctgcggggaccgtctgctggtcact
aagtgtggccgcctgcgtcacaaggagcccagcggcggcggcggcggcggcggcggcggc
ggcggcggcggcggcgtttattgggtggactcgcagcagaagcggtatgtaccagtgaaa
ggagaccacgtgattggcatagtagtcgctaagtctggcgatatattcaaagttgatgtt
ggagggagtgagccagcttctttgtcctacctggcatttgaaggggcaactaaaagaaac
agaccaaatgtacaggttggagatctcatctatggccagtgtgtggttgctaataaagac
atggaaccagaaatggtctgtattgacagctgcggacgcgccaatgggatgggtgtgatt
ggacaggatgggctgctcttcaaagtgaccttgggcttaattagaaagctattggctcca
gattgtgaaatcgtgcaagagctgggaaaactctatccgctggagattgtgtttggaatg
aatgggagaatatgggtcaaggcaaaaaccatccagcagacgttaattttggcaaatgtc
ttagaagcttgtgaacacatgacaacagagcagaggaaacagatctttgccagactggca
gagagctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

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