KEGG   Rattus norvegicus (rat): 313583Help
Entry
313583            CDS       T01003                                 

Gene name
Sf3a3, LRRGT00093
Definition
(RefSeq) splicing factor 3a, subunit 3
  KO
K12827  splicing factor 3A subunit 3
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    313583 (Sf3a3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rno03041]
    313583 (Sf3a3)
Spliceosome [BR:rno03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    313583 (Sf3a3)
 Complex B
    313583 (Sf3a3)
 Complex C
   U2 SnRNP specific factors
    313583 (Sf3a3)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DUF3449 Telomere_Sde2_2 SF3A3 SF3a60_bindingd
Motif
Other DBs
NCBI-GeneID: 313583
NCBI-ProteinID: NP_001020869
RGD: 1308726
Ensembl: ENSRNOG00000007629
UniProt: Q4KLI7
Position
5q36
AA seq 501 aa AA seqDB search
METILEQQRRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDL
YDDKDGLRKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKARENP
SEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKERKNA
EYKRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQTDFEKKWDNGTFPGWPKETSSALTHA
GAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSLESLDTSL
FAKNPKSKGTKRDTERNKDIAFLEAQIYEYVEILGEQRQLTHENVQRKQARTGEEREEEE
EEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCEICGNYTYRGPK
AFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQKASERWQPDTEEEYE
DSSGNVVNKKTYEDLKRQGLL
NT seq 1506 nt NT seq  +upstreamnt  +downstreamnt
atggagacaattttagagcagcaacggcgctatcatgaggagaaagaacggcttatggat
gttatggccaaagaaatgctcactaagaagtccacgctccgggaccagatcaattccgat
caccgcactagggccatgcaagatagatacatggaggtcagtgggaacctgagggatttg
tatgatgataaggatggattacgaaaggaggagctcaatgctatttcaggacccaatgag
tttgctgaattctataacagactgaagcagataaaggaatttcatcggaagcacccaaat
gagatctgtgtgccaatgtcggtggaattcgaggagctcctgaaagctcgagagaatcca
agtgaagaggcacaaaacttggtggagtttacagatgaagagggatatggtcgctacctt
gatctccatgactgctacctcaagtacattaacctgaaggcatctgagaagctggattac
atcacatacctgtccatcttcgatcagttatttgacattccgaaagaaagaaagaatgca
gagtataaaagatacctggagatgctgctggagtacctacaggattacacagatagagtg
aagccccttcaggatcagaacgagctctttgggaagattcagaccgactttgagaagaag
tgggataatggcaccttccctggatggccgaaagagacaagcagtgccctgactcacgcg
ggagcccatcttgatctctccgcattctcctcctgggaggagttggcatccctgggtctg
gacagattgaaatctgcactgttggctttaggcctgaagtgtggtgggaccctagaagaa
cgagctcagagactcttcagcaccaaaggaaagtccttggagtcgctcgacacctctctg
tttgccaaaaatcccaagtcaaagggcacaaagagagacactgagaggaacaaagacatt
gctttcctggaagcccagatctatgaatatgtggagattcttggggaacagcgacagctc
actcatgaaaatgtacagcgcaagcaagccaggacaggtgaggagcgggaggaggaggaa
gaagagcagatcagcgagagcgaaagtgaggacgaagagaatgaaatcatttacaacccc
aaaaacctgcctctgggctgggacggcaaacccatcccctactggctgtacaagctccac
ggcctgaacatcaactacaactgtgagatctgcgggaactacacttaccgagggccgaag
gccttccagcggcacttcgctgaatggcgtcatgctcatggcatgaggtgtttgggcatc
ccaaacactgcccactttgcaaatgtgacacagattgaagatgctgtctccttgtgggcc
aagctgaaactgcagaaggcttcagaacgatggcagcctgacaccgaggaagaatatgaa
gactccagtggaaatgttgtgaacaagaagacatacgaggatctgaaaagacaaggactg
ctctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (21)   

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