KEGG   Rattus norvegicus (rat): 317575
Entry
317575            CDS       T01003                                 
Symbol
Smarca1
Name
(RefSeq) probable global transcription activator SNF2L1
  KO
K11727  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 1 [EC:5.6.2.-]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    317575 (Smarca1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    317575 (Smarca1)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Chromatin remodeling factors
   NuRF complex
    317575 (Smarca1)
   CERF complex
    317575 (Smarca1)
SSDB
Motif
Pfam: SNF2-rel_dom SLIDE HAND Helicase_C ResIII DEAD HDA2-3 Myb_DNA-binding DBINO DUF8810
Other DBs
NCBI-GeneID: 317575
NCBI-ProteinID: NP_001258119
RGD: 1561046
Ensembl: ENSRNOG00000003762
Position
X:complement(131858148..131944639)
AA seq 1062 aa
MEPDTATEAATVAASDARATIVVLEDEQPGPSTFKEEGAAAAATEATTATEKGEKKEKIT
SPFQLKLAAKTSKSEKEMDPEYEEKMVNIPLKADRAKRFEFLLKQTELFAHFIQPSAQKS
PTSPLNMKLARPRVKKDDKQSLISVGDYRHRRTEQEEDEELLSESRKTSNVCVRFEVSPS
YVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNFPGPHM
VLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDVRAAFIRDEMMPGEWDVCVTSYEMVIKE
KSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNF
LLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIY
LGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYT
TDEHIVSNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQT
PHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRA
HRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQM
IRHGATHVFACKESELTDEDIVTILERGEKKTAEMNERMQKMGESSLRNFRMDLEQSLYK
FEGEDYREKQKLGTVEWIEPPKRERKANYAVDAYFREALRVSEPKVPKAPRPPKQPNVQD
FQFFPPRLFELLEKEILYYRKTIGYKVPRNPELPNPAIAQREEQKKIDGAEPLTPQESEE
KDKLLTQGFTNWTKRDFNQFIKANEKYGRDDIDNVAREVEGKSPEEVMEYSAVFWERCNE
LQDIEKIMAQIERGEARIQRRISIKKALDAKIARYKAPFHQLRIQYGTSKGKNYTEEEDR
FLICMLHKMGFDRENVYEELRQCVRNAPQFRFDWFIKSRTAMEFQRRCNTLISLIEKENM
EIEERERAEKKKRATKTPMSQKRKAESATESSGKKDVKKVKS
NT seq 3189 nt   +upstreamnt  +downstreamnt
atggagccggacacggccacagaggcagccaccgtggcagcctcggatgccagagccaca
atcgtggtcctagaggatgagcagcccgggccgtccacctttaaagaggagggagcggct
gctgccgccaccgaagccaccacggccactgagaagggcgagaagaaggagaaaatcact
tctccatttcaactcaaacttgctgctaaaacttccaaatctgaaaaggaaatggaccca
gaatatgaagagaaaatggtaaatatacccttgaaagcagacagagcgaagagatttgag
tttttgctgaagcagacggaactttttgcacatttcattcaaccttcagcacagaagtct
ccaacatctcctcttaacatgaaactggctcgtcctcgagtaaagaaagatgacaagcag
agcttgatttctgtgggagactatcgccacaggcgcacagaacaagaggaagatgaggag
cttctgtcagagagtaggaaaacatcgaatgtgtgtgttagatttgaggtctcaccttct
tatgtgaagggaggacccctgagagattatcagattcgaggactaaactggttgatctct
ttgtatgaaaatggagtcaatggtattttagctgatgaaatgggccttgggaagacttta
caaaccattgctttgcttggttacctgaaacattacagaaactttcctggaccccatatg
gttttagttccaaagtctactttacataactggatgaatgaatttaaacgatgggttccg
tctctccgtgttatttgtttcgttggagacaaagatgtgagagcagcttttattcgtgat
gaaatgatgccaggagaatgggatgtttgtgtgacttcttatgagatggtaattaaagaa
aaatccgtgtttaaaaagtttcactggagatacttagtcattgatgaagctcacagaata
aaaaatgaaaaatctaagctttcagagattgttcgtgagttcaagtcaactaatcgctta
cttctaactgggacacctttgcagaataacttgcatgagctctgggcattacttaacttt
ttattgccggatgtctttaattctgcagatgactttgattcttggtttgatactaaaaat
tgccttggtgatcaaaagcttgtggaaagactccatgcagttttaaaaccattcttgtta
cgccgtataaaaactgatgtagagaaaagtctgcctccaaagaaggaaataaagatttac
ttgggactgagtaaaatgcaacgagaatggtatacaaaaattctgatgaaagatatcgat
gttttaaactcttctggcaagatggacaagatgcgactattgaatattctgatgcagctc
cgaaagtgttgtaatcatccttatctgtttgatggagcagagcctggtccaccttatacg
acagatgagcacattgtcagcaatagtggtaaaatggtagctctggataagctattggcg
agaattaaagaacagggatcaagagttctcatctttagccagatgactcgactgctagac
attttggaggattattgtatgtggcgtggttatgagtattgtcgactggatggacaaacc
ccacatgaagaaagagaggaagcaatagaagccttcaatgctccgaatagcagcaaattc
atctttatgctgagtactagggctggaggactcggaattaacttggcaagtgctgacgtg
gttatcctatatgattcagactggaatcctcaggttgatttacaagctatggatcgggca
catcgcattggtcagaagaagccagtacgagtcttccgtctcattacagacaacacagtg
gaagaaaggattgtagagagagctgagataaaactgagacttgattcaattgttatacag
caagggagactcattgaccaacaatccaacaagctggcaaaagaggaaatgctacaaatg
atacgccatggagccacacacgtttttgcctgtaaagaaagtgagctgacggatgaagac
attgtaactattctggaaagaggggaaaagaagactgcagagatgaatgaacgcatgcag
aaaatgggagagtcatctctaagaaatttcagaatggaccttgaacaaagtttgtacaag
tttgaaggagaagattatagagaaaaacagaagcttggtacggtggaatggattgaacct
cctaaacgagaacgcaaagccaactacgcagtggatgcctactttagagaggctttacgt
gtcagcgagccaaaggtcccaaaggctcctcggcctccaaaacagccaaatgttcaagat
tttcaattttttccaccacgcttatttgagctcctggaaaaggaaattctttattatcgg
aagactataggttacaaggtcccaaggaatcctgagctccccaacccagctatagctcaa
agagaagagcaaaaaaagattgatggagcagaacctcttacaccacaagagagtgaagag
aaagataaacttctcacacaaggtttcacaaactggactaagagagattttaaccagttt
attaaggctaatgagaagtatggtagagatgacattgacaatgtagctcgagaggtagag
ggcaagtcccctgaggaggtcatggagtattcagctgtattttgggaacgctgcaatgaa
ttacaggacattgagaaaattatggctcaaattgaacgtggagaagcaagaattcagcga
agaatcagtattaagaaagcactggatgccaaaattgcaagatacaaggctccatttcat
cagttacggattcagtacggaaccagtaaaggaaagaactatactgaagaagaagacaga
ttcctcatctgtatgttgcacaaaatgggctttgacagagaaaatgtatatgaagaattg
agacagtgcgtacggaatgctccccagtttagatttgactggtttatcaagtcgagaact
gccatggaatttcagagacgctgtaatactttgatttcattgattgaaaaagaaaatatg
gaaattgaggaaagagagagagcagaaaagaagaaacgggcaactaaaactccaatgtca
cagaaaagaaaagcagagtcagctactgagagctctggaaagaaggatgtcaagaaggtg
aaatcctaa

  All links  
Gene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (8)   
   UniProt (1)   
   RefSeq(pep) (7)   
DNA sequence (8)   
   RefSeq(nuc) (8)   
Protein domain (10)   
   Pfam (10)   
All databases (31)   

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