KEGG   Rattus norvegicus (rat): 363630
Entry
363630            CDS       T01003                                 
Symbol
Kdm6b
Name
(RefSeq) lysine-specific demethylase 6B isoform 1
  KO
K11448  lysine-specific demethylase 6B [EC:1.14.11.68]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    363630 (Kdm6b)
Enzymes [BR:rno01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.68  [histone H3]-trimethyl-L-lysine27 demethylase
     363630 (Kdm6b)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    363630 (Kdm6b)
SSDB
Motif
Pfam: JmjC KDM6_C-hel KDM6_GATAL
Other DBs
NCBI-GeneID: 363630
NCBI-ProteinID: NP_001102299
RGD: 1307629
Ensembl: ENSRNOG00000037613
UniProt: A6HFR1
Position
10:complement(54619520..54641014)
AA seq 1569 aa
MHRAVDPPGARSAREAFALGGLSCAGAWSSCPPHPPPRNSWLPGGRCSASIGQPPLSAPL
PPSHGNSSGHPNKPYYASGTPTPRPLHGKLESLHGCVQALLREPAQPVLWEQLGQLYESE
HDSEEAICCYHRALRYGGSFAELGPRIGRLQQAQLWNLHAGSCQHRAKVLPPLEQVWNLL
HLEHKRNYGAKRGGPPVKRSAEPPVVQPMPPAALSGPSGEEGLSPGGKRRRGCSSEQEQR
HSLPHPHPYPAPAYTAHPPSHRLGPATPLGPGPRPPGAESHGCLPATRPPGSDLRESRVQ
RSRMDSSVSPAASTACVPYAPSRPPGLPGTSSSSSSSNNTGLRGVEPSPGIPGADHYQNP
ALEIAPHQARLGPSAHSSRKPFLTAPAAAPHLSLPSGTPSSPPPPCPRLLRPPPPPAWMK
GSACRSAREDGEILGELFFGAEGPPRPPPPPLPHRDGFLGPPNPRFSVGTQDSHTPPTPP
TTTSSSSSSSSSNSHSSSPTGPVPFPPPPYLARSIDPLPRPSSPTLSSQDPPLPPLTLAL
PPAPPSSCHQNTSGSFRRSESPRPRVSFPKTPEVGQGPPPGSLSKAPQPVPPGVGELPAR
GPRLFDFPPTPLEDQFEEPAEFKILPDGLANIMKMLDESIRKEEEQQQQEAGAVPPPPLK
EPFASLRSSLPSDTAPAATTAAATPTTTTTTTTQEEEKKPPPALPPPPPLAKFPPPPQPP
PPPPASPASLLKSLASVLEGQKYCYRGTGAAVSTRPGSVPATQYSPSPASGATAPPPTSV
APSAQGSPKPSVSSSSQFSTSGGPWVRERRAGEEPAPGPVTPAQLPPPLPLPPARSESEV
LEEISRACETLVERVGRSAINPADPVDIADPVDSGTEPQPPPAQAKEESGGVAVAAAGPG
SGKRRQKEHRRHRRTCRDSVGRRPREGRAKAKAKAPKEKSRRVLGNLDLQSEEIQGREKA
RPDVGGASKVKTPTTPAPPPAPAPSAQPTPPSAPVPGKKTREEAPGPPGVSRADMLKLRS
LSEGPPKELKIRLIKVESGDKETFIASEVEERRLRMADLTISHCAADVMRASKNAKVKGK
FRESYLSPAQSVKPKINTEEKLPREKLNPPTPSIYLESKRDAFSPVLLQFCTDPRNPITV
IRGLAGSLRLNLGLFSTKTLVEASGEHTVEVRTQVQQPSDENWDLTGTRQIWPCESSRSH
TTIAKYAQYQASSFQESLQEEKESEDEESEEPDSTTGTSPSSAPDPKNHHIIKFGTNIDL
SDAKRWKPQLQELLKLPAFMRVTSTGNMLSHVGHTILGMNTVQLYMKVPGSRTPGHQENN
NFCSVNINIGPGDCEWFAVHEHYWETISAFCDRHGVDYLTGSWWPILDDLYASNIPVYRF
VQRPGDLVWINAGTVHWVQATGWCNNIAWNVGPLTAYQYQLALERYEWNEVKNVKSIVPM
IHVSWNVARTVKISDPDLFKMIKFCLLQSMKHCQVQRESLVRAGKKIAYQGRVKDEPAYY
CNECDVEVFNILFVTSENGSRNTYLVHCEGCARRRSAGLQGVVVLEQYRTEELAQAYDAF
TLAPASTSR
NT seq 4710 nt   +upstreamnt  +downstreamnt
atgcatcgggcagtggaccctccaggggcccgctctgcacgggaagcctttgcccttggg
ggcttgagctgtgctggggcttggagctcctgcccaccccatcctcctccccgaaactca
tggctgcctggaggcagatgctctgccagcattgggcagcccccactctctgctccttta
cccccctctcatggcaacagctccgggcaccctaacaagccctattatgcttctgggact
cctaccccaagacccctccatgggaagttggagtctctacatggctgtgtacaggcattg
ctccgggagccagcccagccggtcttatgggaacagcttggacagttgtatgagtcggag
cacgacagcgaggaggccatatgctgctaccacagggcccttcgctacggaggaagcttc
gctgaactggggccccgaattggccgattgcagcaggcccagctctggaaccttcatgct
ggttcctgtcagcacagagccaaggtcctgcctcccctggagcaagtatggaatttgctg
caccttgagcacaaacggaactatggggctaagcgagggggccctccagtgaagagatct
gctgaacccccagtggtccagcctatgcctcctgccgcactctcaggcccctcaggagag
gaaggcctcagccctggaggcaagcgcaggagaggctgcagctctgaacaggagcagcgg
cactcgctgcctcaccctcatccatacccagctcctgcctacactgctcatccgcccagc
caccggctgggcccggccacaccccttggtccaggtccccgacccccaggagcagagagc
catggctgcctgcctgccacccgtccccccggaagtgaccttagagagagcagagttcag
aggtcgcggatggactccagcgtttcaccagcagcatctaccgcctgcgtgccttacgcc
ccttcccggccccctggcctccccggcaccagcagcagcagcagtagcagtaacaacact
ggtcttcggggtgtggagccgagcccaggcattcctggcgctgaccattaccaaaaccct
gcgttggagatagcccctcaccaggcccgcctgggtccctccgcacacagcagtcggaaa
ccatttttgacagcccctgctgccgctccccacttatccctaccatccgggaccccttca
tcccctccacccccatgtcctcgcctcttgcgccctccaccaccccctgcttggatgaag
ggctcagcctgccgctcagctcgagaggatggagagatcttaggggagctcttctttggt
gctgagggacctccccgtcctcctcccccaccccttccccaccgtgatggcttcttgggg
cctccaaacccccgcttttctgtgggcactcaggattcgcatacccctcccactccccca
accaccaccagcagcagcagcagcagcagcagcagcaacagccacagcagtagtcctact
gggcctgtgcccttcccaccacctccctatctggccagaagtatagacccccttcccagg
ccatctagcccaacactgagctcccaggacccacctcttccaccactgactcttgccctg
cctccagcccctccctcctcctgccaccaaaatacctcaggaagcttcaggcgctcggag
agcccccggcccagggtctccttcccaaagacccccgaggtggggcaggggccacctcca
ggctctctgagtaaagccccccagcctgtgccacctggggttggagagctgcctgcccga
ggcccgaggctctttgattttccaccaactccactggaggaccagtttgaagagccagct
gaattcaagatcctccctgatgggctagctaacatcatgaagatgctggatgaatccatt
agaaaggaggaagagcagcagcagcaagaggcaggcgcggttcccccacccccactcaaa
gagccctttgcatctctacggtcttcacttcccagtgacacagccccagctgccaccact
gctgctgcaactcccaccaccaccaccaccaccaccacccaagaagaggagaagaagcca
ccaccagccctgccaccaccaccgcctctagccaagtttcctccaccaccccagccccca
ccacctccaccagccagcccagccagcctgctcaaatcattggcctctgttcttgagggg
caaaagtactgttatcgggggactggagcagccgtttcaaccaggcccgggtccgtgccc
gccactcagtattcccctagtcctgcatcaggtgctaccgccccaccacccacttcagtg
gcccctagcgcccagggctcccccaagccctctgtttcctcgtcatctcagttctctacc
tcaggtgggccttgggtccgagagcgcagggcaggtgaagagccagcaccaggccccgtg
acccctgcccagttgcccccacctctgccgctgccccctgctcgttctgagtctgaggtg
ctagaagaaatcagtcgggcttgtgagacccttgtagagcgggtgggccggagtgccatc
aacccagcagacccagtggacatagcagacccagtggacagtgggactgagccacagccg
cctcctgcacaggccaaggaggagagtgggggagtggcagtggcggcagcaggtccaggt
agtggtaagcgtcgtcagaaggagcatcggaggcacagacggacctgtagggacagtgtg
ggtcgtaggccccgtgaggggagggccaaggccaaggccaaggctcccaaagaaaaaagc
cgaagggtgctggggaacttggacttgcagagtgaagagatccagggccgggagaaggcc
cggcctgatgtaggtggggcttccaaagtcaagacgcccacaactccagcgcccccacct
gctcctgccccctctgctcagccaacacccccatcagctcctgtccctgggaagaagact
cgagaggaagctccagggcctccaggtgtgagccgtgcagatatgctgaagcttcggtcg
cttagtgaggggccacctaaggagctgaagatcaggctcatcaaggtggagagtggggac
aaggagaccttcatcgcctctgaggtagaagagcggcggctgcgcatggcagacctcacc
atcagccactgcgctgctgatgtcatgcgtgccagcaagaatgccaaggtgaaagggaaa
ttccgagagtcctacctttcccctgcccagtctgtgaaaccgaagatcaacactgaggag
aagctgccccgggaaaaactcaaccctcctacacccagcatttatttggagagcaaacga
gacgccttctcgccggtcctgctgcagttctgtacagatccccggaaccccatcactgtc
atcaggggcctggcaggttcacttcggctcaacttaggccttttttccaccaagactctg
gtggaggcgagcggtgaacacacagtggaggtccgtacccaagtgcagcagccctcagac
gagaactgggatctgacaggtaccagacagatctggccctgtgagagctcccgttcacac
accaccatcgctaaatatgcacagtaccaggcttcgtccttccaggagtcactgcaggag
gagaaagagagtgaggatgaggaatccgaggaaccagacagcactacaggaacctctccc
agcagtgcaccagaccccaagaaccatcacatcatcaagtttggcacaaacatcgacctg
tctgatgccaagaggtggaagccacaactacaggagctgctgaaactgcctgccttcatg
cgagtaacatccacaggcaacatgcttagccatgtgggacacaccatcctgggcatgaac
accgtgcagctatacatgaaggttcctggcagtcgaacgccaggccaccaggagaataac
aatttttgctctgtcaatatcaacattggccccggggactgcgagtggttcgcggtacat
gagcactattgggagaccatcagcgccttctgcgatcggcatggtgtggattacttgact
ggttcctggtggccaatcttggatgacctctatgcgtccaatattcctgtttaccgcttc
gtgcagcgccctggagaccttgtgtggattaatgcagggactgtgcattgggtgcaggct
actggctggtgcaacaacattgcctggaacgtggggcccctcaccgcctatcaataccag
ctggccctggagcgatatgagtggaacgaggtgaagaacgtcaagtccattgtacccatg
attcatgtgtcctggaacgtagctcgaacggtcaagatcagtgatcctgacttgttcaaa
atgatcaagttctgcctcctgcagtcaatgaagcactgccaggtgcagcgggagagcctg
gtgcgggcagggaagaaaatcgcttaccaaggccgcgtcaaggacgagcctgcctactac
tgcaacgaatgcgatgtggaggtgttcaacatcctgttcgttacaagtgagaatggcagc
cgaaacacgtacctggtgcactgcgagggctgtgcgcgccgtcgcagtgcgggcctacag
ggcgtggtggtgctagagcagtaccgcacagaggagctggcacaggcctatgatgccttc
acactggctcctgccagcacgtcgcgatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (20)   
   UniProt (1)   
   RefSeq(pep) (19)   
DNA sequence (35)   
   RefSeq(nuc) (19)   
   GenBank (8)   
   EMBL (8)   
Protein domain (3)   
   Pfam (3)   
All databases (69)   

Download RDF
DBGET integrated database retrieval system