KEGG   Rattus norvegicus (rat): 365542
Entry
365542            CDS       T01003                                 
Symbol
RT1-DOb
Name
(RefSeq) RT1 class II, DO beta isoform 1
  KO
K06752  MHC class II antigen
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04145  Phagosome
rno04514  Cell adhesion molecules
rno04612  Antigen processing and presentation
rno04640  Hematopoietic cell lineage
rno04658  Th1 and Th2 cell differentiation
rno04659  Th17 cell differentiation
rno04672  Intestinal immune network for IgA production
rno04940  Type I diabetes mellitus
rno05140  Leishmaniasis
rno05145  Toxoplasmosis
rno05150  Staphylococcus aureus infection
rno05152  Tuberculosis
rno05164  Influenza A
rno05166  Human T-cell leukemia virus 1 infection
rno05168  Herpes simplex virus 1 infection
rno05169  Epstein-Barr virus infection
rno05310  Asthma
rno05320  Autoimmune thyroid disease
rno05321  Inflammatory bowel disease
rno05322  Systemic lupus erythematosus
rno05323  Rheumatoid arthritis
rno05330  Allograft rejection
rno05332  Graft-versus-host disease
rno05416  Viral myocarditis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    365542 (RT1-DOb)
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    365542 (RT1-DOb)
 09150 Organismal Systems
  09151 Immune system
   04640 Hematopoietic cell lineage
    365542 (RT1-DOb)
   04612 Antigen processing and presentation
    365542 (RT1-DOb)
   04658 Th1 and Th2 cell differentiation
    365542 (RT1-DOb)
   04659 Th17 cell differentiation
    365542 (RT1-DOb)
   04672 Intestinal immune network for IgA production
    365542 (RT1-DOb)
 09160 Human Diseases
  09172 Infectious disease: viral
   05166 Human T-cell leukemia virus 1 infection
    365542 (RT1-DOb)
   05164 Influenza A
    365542 (RT1-DOb)
   05168 Herpes simplex virus 1 infection
    365542 (RT1-DOb)
   05169 Epstein-Barr virus infection
    365542 (RT1-DOb)
  09171 Infectious disease: bacterial
   05150 Staphylococcus aureus infection
    365542 (RT1-DOb)
   05152 Tuberculosis
    365542 (RT1-DOb)
  09174 Infectious disease: parasitic
   05145 Toxoplasmosis
    365542 (RT1-DOb)
   05140 Leishmaniasis
    365542 (RT1-DOb)
  09163 Immune disease
   05310 Asthma
    365542 (RT1-DOb)
   05322 Systemic lupus erythematosus
    365542 (RT1-DOb)
   05323 Rheumatoid arthritis
    365542 (RT1-DOb)
   05320 Autoimmune thyroid disease
    365542 (RT1-DOb)
   05321 Inflammatory bowel disease
    365542 (RT1-DOb)
   05330 Allograft rejection
    365542 (RT1-DOb)
   05332 Graft-versus-host disease
    365542 (RT1-DOb)
  09166 Cardiovascular disease
   05416 Viral myocarditis
    365542 (RT1-DOb)
  09167 Endocrine and metabolic disease
   04940 Type I diabetes mellitus
    365542 (RT1-DOb)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:rno04147]
    365542 (RT1-DOb)
Exosome [BR:rno04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   365542 (RT1-DOb)
  Exosomal proteins of epithelial cells
   365542 (RT1-DOb)
  Exosomal proteins of breast milk
   365542 (RT1-DOb)
SSDB
Motif
Pfam: MHC_II_beta C1-set Ig_3 MHC_I
Other DBs
NCBI-GeneID: 365542
NCBI-ProteinID: NP_001008846
RGD: 1595814
Ensembl: ENSRNOG00000000454
Vega: OTTRNOG00000001673
UniProt: Q6MGA2 A0A023ILQ6
Position
20:complement(4621336..4627537)
AA seq 272 aa
MGAGRAPWVVALLVNLMRPDSFMVEGRDSPEDFVIQAKAECYFTNGTEKVRFLVRFIFNL
EEYLHFDSDLGFFVALTELGEVDADQWNKRLDLLETSRAAVNMVCRQEYKLGAPFTVERN
VPPEVTVYPERTPLLQQHNLLLCSVTDFYPGDISVRWFRNGQEERSGVMSTGLVRNGDWT
FQTTVMLEMIPELGDVYSCLVEHPGLLRPVSVAWVAQSEYSWEKILSGAAAFLLGLTVFL
VGAVIHLKAQKASVETQPGNEASRALLPPHPY
NT seq 819 nt   +upstreamnt  +downstreamnt
atgggtgctgggagggccccctgggtggtggctctgctagtgaacctcatgaggccagat
tccttcatggttgaaggcagagactccccagaggattttgtgattcaggcgaaggcagag
tgttacttcaccaacggtacagaaaaggtccgcttcctggtcaggttcatcttcaacctg
gaggagtacttacatttcgacagtgacctggggtttttcgtggcactgacggagctgggg
gaggtggacgctgatcagtggaacaaacgcctggatctcctggaaacaagtagagctgct
gtgaacatggtctgcaggcaagagtacaagctgggggcccccttcaccgtggagagaaat
gtgcctccggaggtgacggtgtacccagagaggaccccattgctgcagcagcacaacctg
ttgctctgctctgtgacagacttctaccctggggacataagtgtcaggtggttccggaat
gggcaggaggagaggtccggggtcatgtccactggccttgttaggaatggagactggacc
ttccagacgacggtaatgctggaaatgatcccagagcttggagacgtctacagttgcctt
gtggagcaccccggcctcctgagacctgtttctgtggcatgggtggctcagtctgaatat
tcctgggaaaagatactgagtggagctgcagcattcctgcttgggctgactgtctttctg
gtgggagctgtcatccacctcaaggctcagaaagcgtccgtggagactcagcctggcaat
gaggcttcaagggcgcttctcccacctcacccctactaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (24)   
   KEGG PATHWAY (24)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
   VEGA (1)   
Protein sequence (4)   
   UniProt (2)   
   RefSeq(pep) (2)   
DNA sequence (22)   
   RefSeq(nuc) (4)   
   GenBank (9)   
   EMBL (9)   
Protein domain (4)   
   Pfam (4)   
All databases (64)   

Download RDF
DBGET integrated database retrieval system