KEGG   Rattus norvegicus (rat): 500086
Entry
500086            CDS       T01003                                 
Symbol
Ift56
Name
(RefSeq) intraflagellar transport protein 56
  KO
K19685  intraflagellar transport protein 56
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:rno03037]
    500086 (Ift56)
Cilium and associated proteins [BR:rno03037]
 Primary cilia and associated proteins
  Other primary cilia associated proteins
   500086 (Ift56)
SSDB
Motif
Pfam: TPR_19 ANAPC3 TPR_14 TPR_2 TPR_16 TPR_9 TPR_17 TPR_1 TPR_8 TPR_12 TPR_11 TPR_6 Coatomer_E
Other DBs
NCBI-GeneID: 500086
NCBI-ProteinID: NP_001020216
RGD: 1561363
Ensembl: ENSRNOG00000027617
UniProt: Q5U2N8
Position
4:68057530..68115494
AA seq 554 aa
MMLSRAKPAVGGESPHTDKRKKKGRKIPKLEDLLSQRDFTGAITLLEFKRHVGEQEEDTN
LWIGYCAFHLGDYKRALEEYENAAKEENCNPEVWVNLACTYFFLGMYKQAEAAGFKAPKS
RLQNRLLFHLAHKFNDEKKLMNFHQNLQDIKEDQLSLASIHYMRSHYQEAIDIYKRILLD
NREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLKACNHFRLYNGKAAEA
ELKSLMDNASSPFEFAKELIRHNLVVFRGGEGALQVLPPLVDVIPEARLNLVIYYLRQDD
VQEAYNLIKDLEPTTPQEYILKGVVNAALGQEMGSRDHMKIAQQFFQLVGGSASECDTIP
GRQCMASCFFLLKQFDDVLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSEGEEVFLLIQ
SEKLKNDYIYLSWLARCYIMNKKPRLAWELYLKMETSGESFSLLQLIANDCYKMGQFYYS
AKAFDVLERLDPNPEYWEGKRGACVGIFQMILAGREPKETLREVLHLLRSTGNTQVEYII
RIMKKWAKENRVPI
NT seq 1665 nt   +upstreamnt  +downstreamnt
atgatgctttcaagggccaaacccgctgtgggtggggagtcaccacacactgacaaaaga
aagaagaaagggaggaagattccaaaactagaggatctactttcgcaaagagatttcact
ggcgctattaccctattggagttcaaacgccatgttggggagcaagaagaggacactaac
ttatggattggctactgtgcttttcacctgggtgactacaagagagctttggaggaatac
gaaaacgcggcgaaggaggagaattgcaacccggaagtgtgggtaaacttggcctgcacc
tactttttccttggaatgtataaacaagcagaagctgctgggtttaaagctccaaaaagc
cgactccaaaaccgcctactattccatctggctcacaagtttaatgatgagaagaaatta
atgaactttcatcagaatcttcaggatatcaaagaagaccagcttagcttggcctcaatc
cactacatgcgatctcattaccaagaagctattgatatatacaagcggatactgctggat
aacagggaatacctggccctcaatgtgtatgtggccctctgctactacaaattggattac
tatgatgtgtctcaagaagtcctggctgtttaccttcagcaaattcctgatagcaccatc
gccctcaaccttaaggcctgcaatcactttcgcctttataatggcaaagcagctgaggca
gagctcaaaagcttgatggacaatgcctcttcaccatttgaatttgctaaagaactcatc
agacacaatctggttgttttccgaggaggagaaggggctttgcaggttttacctccccta
gttgatgtcattcctgaagctaggctaaacctagtgatttactaccttcgtcaagatgat
gtgcaggaagcctataatttgatcaaggacctggaacctactacacctcaggagtatatt
ctcaagggagttgtcaatgcagcccttggccaggaaatgggttcaagggatcatatgaaa
attgcccaacagtttttccagttggtaggaggatcagctagtgaatgtgatacaatacca
ggaaggcagtgcatggcttcctgtttcttcctgcttaaacaatttgatgatgtcttgatt
tacctcaactcttttaagagttacttctacaacgacgacatctttaactttaattatgcc
caagccaaagctgcaacaggcaacaccagtgagggtgaggaggttttcctcttgatccaa
agtgagaaattgaaaaatgattacatttaccttagttggttagctcgctgctatattatg
aacaagaaaccaagactagcttgggaactttatctcaagatggaaacctccggcgagtcc
ttcagcctcttacagctcattgccaatgactgttacaagatgggccagttctactattca
gccaaggcttttgatgtcctagagaggctggatcccaaccctgaatactgggaaggcaag
aggggtgcctgtgtgggaattttccagatgattttagctgggagagaacccaaagagacc
ctccgagaagtgctgcatttgctgagaagcacaggaaacacccaagtggagtatatcatc
aggatcatgaagaagtgggccaaggagaatagagtgcccatctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (13)   
   Pfam (13)   
All databases (31)   

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