KEGG   Rattus norvegicus (rat): 500929
Entry
500929            CDS       T01003                                 

Gene name
Tuba1b, RGD1565476
Definition
(RefSeq) tubulin, alpha 1B
  KO
K07374  tubulin alpha
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04145  Phagosome
rno04210  Apoptosis
rno04530  Tight junction
rno04540  Gap junction
rno05010  Alzheimer disease
rno05012  Parkinson disease
rno05014  Amyotrophic lateral sclerosis
rno05016  Huntington disease
rno05020  Prion disease
rno05022  Pathways of neurodegeneration - multiple diseases
rno05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    500929 (Tuba1b)
  09143 Cell growth and death
   04210 Apoptosis
    500929 (Tuba1b)
  09144 Cellular community - eukaryotes
   04530 Tight junction
    500929 (Tuba1b)
   04540 Gap junction
    500929 (Tuba1b)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05010 Alzheimer disease
    500929 (Tuba1b)
   05012 Parkinson disease
    500929 (Tuba1b)
   05014 Amyotrophic lateral sclerosis
    500929 (Tuba1b)
   05016 Huntington disease
    500929 (Tuba1b)
   05020 Prion disease
    500929 (Tuba1b)
   05022 Pathways of neurodegeneration - multiple diseases
    500929 (Tuba1b)
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    500929 (Tuba1b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    500929 (Tuba1b)
   03036 Chromosome and associated proteins [BR:rno03036]
    500929 (Tuba1b)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:rno04812]
    500929 (Tuba1b)
   04147 Exosome [BR:rno04147]
    500929 (Tuba1b)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     500929 (Tuba1b)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Centrosome formation and ciliogenesis proteins
   Microtubules and associated factors
    Other tubulins
     500929 (Tuba1b)
Cytoskeleton proteins [BR:rno04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulins
    500929 (Tuba1b)
Exosome [BR:rno04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   500929 (Tuba1b)
  Exosomal proteins of other body fluids (saliva and urine)
   500929 (Tuba1b)
  Exosomal proteins of colorectal cancer cells
   500929 (Tuba1b)
SSDB
Motif
Pfam: Tubulin Tubulin_C Tubulin_3
Other DBs
NCBI-GeneID: 500929
NCBI-ProteinID: NP_001037735
RGD: 1565476
Ensembl: ENSRNOG00000053468
UniProt: Q6P9V9
Position
7q36
AA seq 451 aa
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP
TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
AREDMAALEKDYEEVGVDSVEGEGEEEGEEY
NT seq 1356 nt   +upstreamnt  +downstreamnt
atgcgtgagtgcatctccatccacgtcggccaggctggtgtccagatcggcaatgcctgc
tgggagctctactgcctggaacatggcatccagcctgatggccagatgccaagcgacaag
accattgggggaggagatgactccttcaacaccttcttcagtgagacaggagctggcaag
cacgtgccccgggcggtgttcgtagacctggaacccacagttattgatgaagttcgcact
ggcacctaccgccagctcttccacccagagcagctcatcacaggcaaggaagatgctgcc
aataactatgcccgtggccactacaccattggcaaggagatcattgaccttgtcttggac
agaattcgcaagctggctgaccagtgcaccggtctccagggcttcttggttttccacagc
tttggtgggggaactggctctgggttcacctccctgctgatggagaggctctctgtcgac
tacggaaagaagtccaagctggagttctccatttacccagccccccaggtttccactgct
gtggttgagccctacaattccatcctcaccacccacaccaccctggagcactctgattgt
gccttcatggtagacaatgaggccatctatgacatctgtcgtagaaacctcgacattgag
cgcccaacctacactaaccttaaccgccttattagccagattgtgtcttccatcactgct
tccctcagatttgatggggccctgaatgttgatctgacagaattccagaccaacctggtg
ccctaccctcgcatccacttccctctggccacttatgcccctgtcatctctgctgagaaa
gcctaccatgaacagctttctgtagcagagatcaccaatgcctgctttgagccagccaac
cagatggtgaaatgtgaccctcgccatggtaaatacatggcttgctgcctgctgtaccgt
ggtgatgtggtccccaaagatgtcaatgctgccattgccaccatcaagaccaagcgcagc
atccagtttgtggactggtgccccactggcttcaaggttggcattaattaccagcctccc
actgtggtacctggtggcgacctggccaaggtccagagagctgtgtgtatgctgagcaac
accacagccattgctgaggcttgggctcgcctggatcacaagtttgatctgatgtatgcc
aagcgtgcctttgtgcactggtacgtgggtgagggcatggaggagggagagttctctgag
gcccgtgaggacatggctgccctagagaaggattatgaggaggttggtgtggattctgtg
gagggtgagggtgaggaagaaggagaggaatactag

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (11)   
   KEGG PATHWAY (11)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (66)   
   RefSeq(nuc) (2)   
   GenBank (32)   
   EMBL (32)   
Protein domain (3)   
   Pfam (3)   
All databases (96)   

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